File: vtkXMLPartitionedDataSetCollectionWriter.cxx

package info (click to toggle)
paraview 5.13.2%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: sid, trixie
  • size: 544,220 kB
  • sloc: cpp: 3,374,605; ansic: 1,332,409; python: 150,381; xml: 122,166; sql: 65,887; sh: 7,317; javascript: 5,262; yacc: 4,417; java: 3,977; perl: 2,363; lex: 1,929; f90: 1,397; makefile: 170; objc: 153; tcl: 59; pascal: 50; fortran: 29
file content (246 lines) | stat: -rw-r--r-- 8,710 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
// SPDX-License-Identifier: BSD-3-Clause
#include "vtkXMLPartitionedDataSetCollectionWriter.h"

#include "vtkBase64Utilities.h"
#include "vtkDataAssembly.h"
#include "vtkErrorCode.h"
#include "vtkInformation.h"
#include "vtkLogger.h"
#include "vtkMultiProcessController.h"
#include "vtkMultiProcessStream.h"
#include "vtkNew.h"
#include "vtkObjectFactory.h"
#include "vtkPartitionedDataSet.h"
#include "vtkPartitionedDataSetCollection.h"
#include "vtkXMLCompositeDataSetWriterHelper.h"
#include "vtkXMLDataElement.h"
#include "vtkXMLDataWriterHelper.h"

#include <vtksys/SystemTools.hxx>

#include <cassert>
#include <map>
#include <memory>
#include <numeric>

VTK_ABI_NAMESPACE_BEGIN
vtkStandardNewMacro(vtkXMLPartitionedDataSetCollectionWriter);
//------------------------------------------------------------------------------
vtkXMLPartitionedDataSetCollectionWriter::vtkXMLPartitionedDataSetCollectionWriter() = default;

//------------------------------------------------------------------------------
vtkXMLPartitionedDataSetCollectionWriter::~vtkXMLPartitionedDataSetCollectionWriter() = default;

//----------------------------------------------------------------------------
void vtkXMLPartitionedDataSetCollectionWriter::SetInputData(vtkPartitionedDataSetCollection* pdc)
{
  this->SetInputDataObject(pdc);
}

//------------------------------------------------------------------------------
int vtkXMLPartitionedDataSetCollectionWriter::FillInputPortInformation(
  int vtkNotUsed(port), vtkInformation* info)
{
  info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkPartitionedDataSetCollection");
  return 1;
}

//----------------------------------------------------------------------------
int vtkXMLPartitionedDataSetCollectionWriter::RequestData(
  vtkInformation*, vtkInformationVector** inputVector, vtkInformationVector*)
{
  vtkLogScopeF(TRACE, "RequestData ('%s')", this->FileName);
  this->SetErrorCode(vtkErrorCode::UnknownError);

  if (this->WriteToOutputString)
  {
    vtkErrorMacro("This writer does not support writing to string yet.");
    return 0;
  }

  if (!this->FileName || this->FileName[0] == '\0')
  {
    this->SetErrorCode(vtkErrorCode::NoFileNameError);
    vtkErrorMacro("Filename cannot be empty!");
    return 0;
  }

  auto inputPDC = vtkPartitionedDataSetCollection::GetData(inputVector[0], 0);
  assert(inputPDC != nullptr);

  this->UpdateProgress(0.0);

  std::string path, filename, artifactsDir;
  std::tie(path, filename, artifactsDir) = vtkXMLWriter2::SplitFileName(this->FileName);
  vtkLogF(TRACE, "Filename components(path='%s', filename='%s', artifactsDir='%s')", path.c_str(),
    filename.c_str(), artifactsDir.c_str());
  if (!this->MakeDirectory(path))
  {
    this->SetErrorCode(vtkErrorCode::OutOfDiskSpaceError);
    vtkErrorMacro("Failed to create directory '" << path << "'.");
    return 0;
  }

  // we intentionally don't add path as an artifact to cleanup if write fails.
  // this->AddArtifact(path, true);
  const auto absoluteArtifactsDir = path + "/" + artifactsDir;
  if (!this->MakeDirectory(absoluteArtifactsDir))
  {
    this->SetErrorCode(vtkErrorCode::OutOfDiskSpaceError);
    vtkErrorMacro("Failed to create directory '" << absoluteArtifactsDir << "'.");
    return 0;
  }
  this->AddRootArtifact(absoluteArtifactsDir, /*isDir*/ true);

  auto controller = this->GetController();

  vtkNew<vtkXMLCompositeDataSetWriterHelper> helper;
  helper->SetWriter(this);

  const auto filenameNoExt = vtksys::SystemTools::GetFilenameWithoutLastExtension(filename);
  std::vector<std::vector<std::string>> allFilenames(inputPDC->GetNumberOfPartitionedDataSets());

  // Write individual files for each dataset in every partitioned-dataset
  // and build the list of filenames to write the summary file.
  for (unsigned int pidx = 0, max = inputPDC->GetNumberOfPartitionedDataSets(); pidx < max; ++pidx)
  {
    auto pds = inputPDC->GetPartitionedDataSet(pidx);

    // note: localDataSets may have nullptrs.
    auto localDataSets =
      vtkCompositeDataSet::GetDataSets<vtkDataObject>(pds, /*preserveNull=*/true);
    int localOffset =
      vtkXMLWriter2::ExclusiveScanSum(controller, static_cast<int>(localDataSets.size()));

    for (auto& dataset : localDataSets)
    {
      const auto prefix = artifactsDir + "/" + filenameNoExt + "_" + std::to_string(pidx) + "_" +
        std::to_string(localOffset);
      const auto fname = helper->WriteDataSet(path, prefix, dataset);
      allFilenames[pidx].push_back(fname);
      if (!fname.empty())
      {
        this->AddArtifact(fname);
      }
      ++localOffset;
    }

    // pass written filenames to root node. Returned valie is non empty only on root node.
    allFilenames[pidx] = vtkXMLWriter2::Gather(controller, allFilenames[pidx], 0);
  }

  // Now write the summary XML on the root node.
  bool success = true;
  if (controller == nullptr || controller->GetLocalProcessId() == 0)
  {
    success = this->WriteSummaryXML(inputPDC, allFilenames);
  }
  if (controller != nullptr && controller->GetNumberOfProcesses() > 1)
  {
    int message[2] = { success ? 1 : 0, static_cast<int>(this->GetErrorCode()) };
    controller->Broadcast(message, 2, 0);
    success = (message[0] == 1);
    this->SetErrorCode(message[1]);
  }
  else if (success)
  {
    this->SetErrorCode(vtkErrorCode::NoError);
  }
  this->UpdateProgress(1.0);
  vtkLogF(TRACE, "success: %d", (int)success);
  return success ? 1 : 0;
}

//------------------------------------------------------------------------------
bool vtkXMLPartitionedDataSetCollectionWriter::WriteSummaryXML(
  vtkPartitionedDataSetCollection* input, const std::vector<std::vector<std::string>>& allFilenames)
{
  assert(static_cast<unsigned int>(allFilenames.size()) == input->GetNumberOfPartitionedDataSets());

  vtkNew<vtkXMLDataWriterHelper> helper;
  helper->SetWriter(this);
  helper->SetDataSetVersion(this->GetDataSetMajorVersion(), this->GetDataSetMinorVersion());
  helper->SetDataSetName(input->GetClassName());
  if (!helper->OpenFile())
  {
    return false;
  }
  this->AddArtifact(this->FileName);

  if (!helper->BeginWriting())
  {
    return false;
  }

  // build and serialize the DOM.
  vtkNew<vtkXMLDataElement> root;
  root->SetName(input->GetClassName());
  int pindex = 0;
  for (const auto& partitionNames : allFilenames)
  {
    int dindex = 0;
    vtkNew<vtkXMLDataElement> parent;
    parent->SetName("Partitions");
    parent->SetIntAttribute("index", pindex);
    for (const auto& fname : partitionNames)
    {
      if (!fname.empty()) // fname will be empty for null nodes in the input.
      {
        vtkNew<vtkXMLDataElement> child;
        child->SetName("DataSet");
        child->SetIntAttribute("index", dindex);
        child->SetAttribute("file", fname.c_str());
        parent->AddNestedElement(child);
      }
      ++dindex;
    }

    const bool hasName =
      input->HasMetaData(pindex) && input->GetMetaData(pindex)->Has(vtkCompositeDataSet::NAME());

    // skip empty partitions, however do preserve name, if present.
    if (parent->GetNumberOfNestedElements() > 0 || hasName)
    {
      if (hasName)
      {
        parent->SetAttribute("name", input->GetMetaData(pindex)->Get(vtkCompositeDataSet::NAME()));
      }
      root->AddNestedElement(parent);
    }
    ++pindex;
  }

  // add DataAssembly
  if (auto da = input->GetDataAssembly())
  {
    vtkNew<vtkXMLDataElement> child;
    child->SetName("DataAssembly");
    child->SetAttribute("encoding", "base64");

    // As a first pass, we'll encode the XML and add it as char data. In
    // reality, we should be able to add the XML simply as a nested element,
    // however `vtkXMLDataParser`'s inability to read from a string makes it
    // unnecessarily hard and hence we leave that for now.
    auto xml = da->SerializeToXML(vtkIndent().GetNextIndent());
    unsigned char* encoded_buffer = new unsigned char[xml.size() * 2];
    auto encoded_buffer_size =
      vtkBase64Utilities::Encode(reinterpret_cast<const unsigned char*>(xml.c_str()),
        static_cast<unsigned long>(xml.size()), encoded_buffer);
    child->SetCharacterData(
      reinterpret_cast<char*>(encoded_buffer), static_cast<int>(encoded_buffer_size));
    delete[] encoded_buffer;
    root->AddNestedElement(child);
  }

  helper->AddXML(root);
  helper->AddGlobalFieldData(input);
  return helper->EndWriting() != 0;
}

//------------------------------------------------------------------------------
void vtkXMLPartitionedDataSetCollectionWriter::PrintSelf(ostream& os, vtkIndent indent)
{
  this->Superclass::PrintSelf(os, indent);
}
VTK_ABI_NAMESPACE_END