1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246
|
// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
// SPDX-License-Identifier: BSD-3-Clause
#include "vtkXMLPartitionedDataSetCollectionWriter.h"
#include "vtkBase64Utilities.h"
#include "vtkDataAssembly.h"
#include "vtkErrorCode.h"
#include "vtkInformation.h"
#include "vtkLogger.h"
#include "vtkMultiProcessController.h"
#include "vtkMultiProcessStream.h"
#include "vtkNew.h"
#include "vtkObjectFactory.h"
#include "vtkPartitionedDataSet.h"
#include "vtkPartitionedDataSetCollection.h"
#include "vtkXMLCompositeDataSetWriterHelper.h"
#include "vtkXMLDataElement.h"
#include "vtkXMLDataWriterHelper.h"
#include <vtksys/SystemTools.hxx>
#include <cassert>
#include <map>
#include <memory>
#include <numeric>
VTK_ABI_NAMESPACE_BEGIN
vtkStandardNewMacro(vtkXMLPartitionedDataSetCollectionWriter);
//------------------------------------------------------------------------------
vtkXMLPartitionedDataSetCollectionWriter::vtkXMLPartitionedDataSetCollectionWriter() = default;
//------------------------------------------------------------------------------
vtkXMLPartitionedDataSetCollectionWriter::~vtkXMLPartitionedDataSetCollectionWriter() = default;
//----------------------------------------------------------------------------
void vtkXMLPartitionedDataSetCollectionWriter::SetInputData(vtkPartitionedDataSetCollection* pdc)
{
this->SetInputDataObject(pdc);
}
//------------------------------------------------------------------------------
int vtkXMLPartitionedDataSetCollectionWriter::FillInputPortInformation(
int vtkNotUsed(port), vtkInformation* info)
{
info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkPartitionedDataSetCollection");
return 1;
}
//----------------------------------------------------------------------------
int vtkXMLPartitionedDataSetCollectionWriter::RequestData(
vtkInformation*, vtkInformationVector** inputVector, vtkInformationVector*)
{
vtkLogScopeF(TRACE, "RequestData ('%s')", this->FileName);
this->SetErrorCode(vtkErrorCode::UnknownError);
if (this->WriteToOutputString)
{
vtkErrorMacro("This writer does not support writing to string yet.");
return 0;
}
if (!this->FileName || this->FileName[0] == '\0')
{
this->SetErrorCode(vtkErrorCode::NoFileNameError);
vtkErrorMacro("Filename cannot be empty!");
return 0;
}
auto inputPDC = vtkPartitionedDataSetCollection::GetData(inputVector[0], 0);
assert(inputPDC != nullptr);
this->UpdateProgress(0.0);
std::string path, filename, artifactsDir;
std::tie(path, filename, artifactsDir) = vtkXMLWriter2::SplitFileName(this->FileName);
vtkLogF(TRACE, "Filename components(path='%s', filename='%s', artifactsDir='%s')", path.c_str(),
filename.c_str(), artifactsDir.c_str());
if (!this->MakeDirectory(path))
{
this->SetErrorCode(vtkErrorCode::OutOfDiskSpaceError);
vtkErrorMacro("Failed to create directory '" << path << "'.");
return 0;
}
// we intentionally don't add path as an artifact to cleanup if write fails.
// this->AddArtifact(path, true);
const auto absoluteArtifactsDir = path + "/" + artifactsDir;
if (!this->MakeDirectory(absoluteArtifactsDir))
{
this->SetErrorCode(vtkErrorCode::OutOfDiskSpaceError);
vtkErrorMacro("Failed to create directory '" << absoluteArtifactsDir << "'.");
return 0;
}
this->AddRootArtifact(absoluteArtifactsDir, /*isDir*/ true);
auto controller = this->GetController();
vtkNew<vtkXMLCompositeDataSetWriterHelper> helper;
helper->SetWriter(this);
const auto filenameNoExt = vtksys::SystemTools::GetFilenameWithoutLastExtension(filename);
std::vector<std::vector<std::string>> allFilenames(inputPDC->GetNumberOfPartitionedDataSets());
// Write individual files for each dataset in every partitioned-dataset
// and build the list of filenames to write the summary file.
for (unsigned int pidx = 0, max = inputPDC->GetNumberOfPartitionedDataSets(); pidx < max; ++pidx)
{
auto pds = inputPDC->GetPartitionedDataSet(pidx);
// note: localDataSets may have nullptrs.
auto localDataSets =
vtkCompositeDataSet::GetDataSets<vtkDataObject>(pds, /*preserveNull=*/true);
int localOffset =
vtkXMLWriter2::ExclusiveScanSum(controller, static_cast<int>(localDataSets.size()));
for (auto& dataset : localDataSets)
{
const auto prefix = artifactsDir + "/" + filenameNoExt + "_" + std::to_string(pidx) + "_" +
std::to_string(localOffset);
const auto fname = helper->WriteDataSet(path, prefix, dataset);
allFilenames[pidx].push_back(fname);
if (!fname.empty())
{
this->AddArtifact(fname);
}
++localOffset;
}
// pass written filenames to root node. Returned valie is non empty only on root node.
allFilenames[pidx] = vtkXMLWriter2::Gather(controller, allFilenames[pidx], 0);
}
// Now write the summary XML on the root node.
bool success = true;
if (controller == nullptr || controller->GetLocalProcessId() == 0)
{
success = this->WriteSummaryXML(inputPDC, allFilenames);
}
if (controller != nullptr && controller->GetNumberOfProcesses() > 1)
{
int message[2] = { success ? 1 : 0, static_cast<int>(this->GetErrorCode()) };
controller->Broadcast(message, 2, 0);
success = (message[0] == 1);
this->SetErrorCode(message[1]);
}
else if (success)
{
this->SetErrorCode(vtkErrorCode::NoError);
}
this->UpdateProgress(1.0);
vtkLogF(TRACE, "success: %d", (int)success);
return success ? 1 : 0;
}
//------------------------------------------------------------------------------
bool vtkXMLPartitionedDataSetCollectionWriter::WriteSummaryXML(
vtkPartitionedDataSetCollection* input, const std::vector<std::vector<std::string>>& allFilenames)
{
assert(static_cast<unsigned int>(allFilenames.size()) == input->GetNumberOfPartitionedDataSets());
vtkNew<vtkXMLDataWriterHelper> helper;
helper->SetWriter(this);
helper->SetDataSetVersion(this->GetDataSetMajorVersion(), this->GetDataSetMinorVersion());
helper->SetDataSetName(input->GetClassName());
if (!helper->OpenFile())
{
return false;
}
this->AddArtifact(this->FileName);
if (!helper->BeginWriting())
{
return false;
}
// build and serialize the DOM.
vtkNew<vtkXMLDataElement> root;
root->SetName(input->GetClassName());
int pindex = 0;
for (const auto& partitionNames : allFilenames)
{
int dindex = 0;
vtkNew<vtkXMLDataElement> parent;
parent->SetName("Partitions");
parent->SetIntAttribute("index", pindex);
for (const auto& fname : partitionNames)
{
if (!fname.empty()) // fname will be empty for null nodes in the input.
{
vtkNew<vtkXMLDataElement> child;
child->SetName("DataSet");
child->SetIntAttribute("index", dindex);
child->SetAttribute("file", fname.c_str());
parent->AddNestedElement(child);
}
++dindex;
}
const bool hasName =
input->HasMetaData(pindex) && input->GetMetaData(pindex)->Has(vtkCompositeDataSet::NAME());
// skip empty partitions, however do preserve name, if present.
if (parent->GetNumberOfNestedElements() > 0 || hasName)
{
if (hasName)
{
parent->SetAttribute("name", input->GetMetaData(pindex)->Get(vtkCompositeDataSet::NAME()));
}
root->AddNestedElement(parent);
}
++pindex;
}
// add DataAssembly
if (auto da = input->GetDataAssembly())
{
vtkNew<vtkXMLDataElement> child;
child->SetName("DataAssembly");
child->SetAttribute("encoding", "base64");
// As a first pass, we'll encode the XML and add it as char data. In
// reality, we should be able to add the XML simply as a nested element,
// however `vtkXMLDataParser`'s inability to read from a string makes it
// unnecessarily hard and hence we leave that for now.
auto xml = da->SerializeToXML(vtkIndent().GetNextIndent());
unsigned char* encoded_buffer = new unsigned char[xml.size() * 2];
auto encoded_buffer_size =
vtkBase64Utilities::Encode(reinterpret_cast<const unsigned char*>(xml.c_str()),
static_cast<unsigned long>(xml.size()), encoded_buffer);
child->SetCharacterData(
reinterpret_cast<char*>(encoded_buffer), static_cast<int>(encoded_buffer_size));
delete[] encoded_buffer;
root->AddNestedElement(child);
}
helper->AddXML(root);
helper->AddGlobalFieldData(input);
return helper->EndWriting() != 0;
}
//------------------------------------------------------------------------------
void vtkXMLPartitionedDataSetCollectionWriter::PrintSelf(ostream& os, vtkIndent indent)
{
this->Superclass::PrintSelf(os, indent);
}
VTK_ABI_NAMESPACE_END
|