1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
|
// SPDX-FileCopyrightText: Copyright (c) Kitware Inc.
// SPDX-License-Identifier: BSD-3-Clause
#include "FEAdaptor.h"
#include <cstdlib>
#include <iostream>
#include <vtkCPDataDescription.h>
#include <vtkCPInputDataDescription.h>
#include <vtkCPProcessor.h>
#include <vtkCPPythonPipeline.h>
#include <vtkDataArray.h>
#include <vtkDoubleArray.h>
#include <vtkHyperTree.h>
#include <vtkHyperTreeCursor.h>
#include <vtkHyperTreeGrid.h>
#include <vtkIntArray.h>
#include <vtkMultiProcessController.h>
#include <vtkNew.h>
#include <vtkPointData.h>
#include <vtkPoints.h>
FEAdaptor::FEAdaptor(int numScripts, char* scripts[])
{
this->Processor = vtkCPProcessor::New();
this->Processor->Initialize();
for (int i = 0; i < numScripts; i++)
{
if (auto pipeline = vtkCPPythonPipeline::CreateAndInitializePipeline(scripts[i]))
{
Processor->AddPipeline(pipeline);
}
else
{
vtkLogF(ERROR, "failed to setup pipeline for '%s'", scripts[i]);
}
}
}
FEAdaptor::~FEAdaptor()
{
this->Finalize();
}
void FEAdaptor::Finalize()
{
if (this->Processor)
{
this->Processor->Delete();
this->Processor = nullptr;
}
}
void FEAdaptor::CoProcess(double time, unsigned int timeStep, bool lastTimeStep)
{
vtkNew<vtkCPDataDescription> dataDescription;
dataDescription->AddInput("input");
dataDescription->SetTimeData(time, timeStep);
if (lastTimeStep == true)
{
// assume that we want to all the pipelines to execute if it
// is the last time step.
dataDescription->ForceOutputOn();
}
if (this->Processor->RequestDataDescription(dataDescription) != 0)
{
vtkMultiProcessController* controller = vtkMultiProcessController::GetGlobalController();
int numberOfProcesses = controller->GetNumberOfProcesses();
int processId = controller->GetLocalProcessId();
vtkNew<vtkHyperTreeGrid> hyperTreeGrid;
hyperTreeGrid->Initialize();
int extent[6] = { processId, processId + 1, 0, 1, 0, 1 };
hyperTreeGrid->SetGridExtent(extent);
hyperTreeGrid->SetDimension(3);
// hyperTreeGrid->SetOrientation(0);
hyperTreeGrid->SetBranchFactor(2);
// hyperTreeGrid->SetMaterialMaskIndex(nullptr);
vtkNew<vtkDoubleArray> xCoords;
xCoords->SetNumberOfValues(2);
xCoords->SetValue(0, processId);
xCoords->SetValue(1, processId + 1.);
vtkNew<vtkDoubleArray> yCoords;
yCoords->SetNumberOfValues(2);
yCoords->SetValue(0, 0);
yCoords->SetValue(1, 1);
vtkNew<vtkDoubleArray> zCoords;
zCoords->SetNumberOfValues(2);
zCoords->SetValue(0, 0);
zCoords->SetValue(1, 1);
hyperTreeGrid->SetXCoordinates(xCoords);
hyperTreeGrid->SetYCoordinates(yCoords);
hyperTreeGrid->SetZCoordinates(zCoords);
hyperTreeGrid->GenerateTrees();
this->FillHTG(hyperTreeGrid);
vtkCPInputDataDescription* inputDataDescription =
dataDescription->GetInputDescriptionByName("input");
inputDataDescription->SetGrid(hyperTreeGrid);
// Set whole extent
int wholeExtent[6] = { 0, numberOfProcesses, 0, 1, 0, 1 };
inputDataDescription->SetWholeExtent(wholeExtent);
this->Processor->CoProcess(dataDescription);
}
}
bool FEAdaptor::ShouldRefine(unsigned int level)
{
return level < 1 || (level < 5 && rand() % 100 < 80);
}
void FEAdaptor::AddData(vtkHyperTreeGrid* htg, vtkHyperTreeCursor* cursor)
{
vtkDataArray* levels = htg->GetPointData()->GetArray("levels");
vtkDataArray* ids = htg->GetPointData()->GetArray("ids");
// std::cout << "add levels: " << levels << std::endl;
// std::cout << "add ids: " << ids << std::endl;
unsigned int level = cursor->GetLevel();
vtkIdType idx = cursor->GetTree()->GetGlobalIndexFromLocal(cursor->GetVertexId());
levels->InsertTuple1(idx, level);
ids->InsertTuple1(idx, idx);
// std::cout << "add data at " << idx << " with level " << level << std::endl;
}
void FEAdaptor::SubdivideLeaves(vtkHyperTreeGrid* htg, vtkHyperTreeCursor* cursor, long long treeId)
{
this->AddData(htg, cursor);
if (cursor->IsLeaf())
{
if (this->ShouldRefine(cursor->GetLevel()))
{
htg->SubdivideLeaf(cursor, treeId);
this->SubdivideLeaves(htg, cursor, treeId);
}
}
else
{
long long nbChildren = cursor->GetNumberOfChildren();
for (long long childIdx = 0; childIdx < nbChildren; childIdx++)
{
cursor->ToChild(childIdx);
this->SubdivideLeaves(htg, cursor, treeId);
cursor->ToParent();
}
}
}
void FEAdaptor::FillHTG(vtkHyperTreeGrid* htg)
{
vtkNew<vtkIntArray> levels;
levels->SetName("levels");
htg->GetPointData()->AddArray(levels);
// std::cout << "levels: " << htg->GetPointData()->GetArray("levels") << std::endl;
vtkNew<vtkIntArray> ids;
ids->SetName("ids");
htg->GetPointData()->AddArray(ids);
// std::cout << "ids: " << htg->GetPointData()->GetArray("ids") << std::endl;
std::cout << "FillHTG" << std::endl;
long long treeOffset = 0;
long long nbTree = htg->GetNumberOfTrees();
for (long long treeId = 0; treeId < nbTree; treeId++)
{
vtkHyperTreeCursor* cursor = htg->NewCursor(treeId);
cursor->ToRoot();
cursor->GetTree()->SetGlobalIndexStart(treeOffset);
this->SubdivideLeaves(htg, cursor, treeId);
treeOffset += cursor->GetTree()->GetNumberOfVertices();
cursor->Delete();
}
std::cout << "Data size: " << treeOffset << std::endl;
std::cout << "Ids size: " << ids->GetNumberOfTuples() << std::endl;
std::cout << "Levels size: " << levels->GetNumberOfTuples() << std::endl;
}
|
