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###############################################################################
#
# ParsInsert
#
# ParsInsert efficiently produces both a phylogenetic tree and taxonomic
# classification for sequences for microbial community sequence analysis.
#
###############################################################################
Summary: ParsInsert is a C++ implementation of Parsimonious Insertion.
The algorithm exploits the knowledge provided by publicly
available curated phylogenetic trees to efficiently insert new
sequences and infer their taxonomic classification. The
ParsInsert placement of new sequences in the tree is
deterministic which allows for distributed processing to quickly
handle millions of reads.
Availability: ParsInsert source code and documentation are available at:
http://parsinsert.sourceforge.net
Contact: david.knox@colorado.edu
###############################################################################
##
## Developer : David Knox (david.knox@colorado.edu) Jan 2011
## Copyright : Copyright (C) 2007-2011 David Knox
##
## Web site : http://parsinsert.sourceforge.net/
##
###############################################################################
## This file is part of ParsInsert.
##
## ParsInsert is free software: you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundation, either version 3 of the License, or
## (at your option) any later version.
##
## ParsInsert is distributed in the hope that it will be useful,
## but WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
## GNU General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with ParsInsert. If not, see <http://www.gnu.org/licenses/>.
###############################################################################
##########################
Release Notes:
##########################
Version: 1.01
Inital Release
##########################
Version: 1.02 10/11/11
- Added '-p' option to print comment in each leaf node (default is off)
- Fixed bug: 0 execution time causing divide by zero
##########################
Version: 1.03 10/17/11
- Added hack code to parse attributes for root node
##########################
Version: 1.04 10/27/11
- Bug Fix. Building new branch in insertion tree, corrected branch lengths to new nodes.
- Added -D param to set tree branch length precision, Default to 5.
- Added Branch lengths written to given precision.
##########################
##########################
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