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#!/usr/bin/make -f
# Hardening and lack of position independent executable are causing a number of
# errors in parsinsert results when a number of compiler optimizations are
# active. See #964082 for further details on the issue.
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
export DEB_CXXFLAGS_MAINT_APPEND = -fPIE
# Also, although -fPIE does help on several platforms, a bunch of architectures
# are still affected by the precision issue.
UNOPTIMIZED_ARCHS := armel armhf mips64el ppc64el hppa ia64 powerpc ppc64 x32
ifneq (,$(filter $(DEB_BUILD_ARCH),$(UNOPTIMIZED_ARCHS)))
export DEB_CXXFLAGS_MAINT_APPEND = -O1
endif
%:
dh $@
execute_after_dh_auto_build:
mv ParsInsert parsinsert
override_dh_auto_clean:
mv parsinsert ParsInsert || true
dh_auto_clean
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
cd debian/tests/test_data && \
$(CURDIR)/parsinsert -d0 -c80 -n1 set1000.fasta -m lanemask.txt -x rdp.taxonomy \
-l set1000.log -o set1000.results -t core_rdp.ntree \
-s core_rdp.fasta && \
cmp -s right_results set1000.results || { \
echo "incorrect result" ; \
exit 1 ; } && \
rm -f set1000.results set1000.tree
endif
# Note a manpage was generated using:
# help2man -N ./parsinsert --version-string=1.04 > debian/parsinsert.1
# But this was then manually edited, so it is not rebuilt automatically.
override_dh_install:
dh_install -Xset1000.log
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