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Source: parsnp
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 10),
dh-autoreconf,
python-all-dev,
python-setuptools,
cython,
libmuscle-3.7-dev
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/parsnp.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/parsnp.git
Homepage: http://harvest.readthedocs.org/en/latest/content/parsnp.html
X-Python-Version: >= 2.7
Package: parsnp
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
${python:Depends},
python-numpy,
fasttree,
mummer,
phipack,
Recommends: python-dendropy
Description: rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
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