1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
|
# PatMaN DNA pattern matcher
# (C) 2007 Kay Pruefer, Udo Stenzel
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or (at
# your option) any later version. See the LICENSE file for details.
prefix := ${HOME}
version := 1.2
TARGETS := patman
OBJS := prefix_tree.o fasta.o main.o
CXXFLAGS += -Wall
CXXFLAGS += -O3 -funroll-loops -DNDEBUG
# CXXFLAGS += -ggdb
LDLIBS += -lpopt
all: $(TARGETS)
patman: $(OBJS)
g++ $(CXXFLAGS) -o $@ $(OBJS) $(LDFLAGS) $(LDLIBS)
%.o: %.cpp
g++ -DVERSION="\"$(version)\"" $(CPPFLAGS) $(CXXFLAGS) -c -o $@ $<
install: $(TARGETS)
install -d ${prefix}/bin
install -d ${prefix}/share/man/man1
install -s -m755 $^ ${prefix}/bin
install -m644 patman.1 ${prefix}/share/man/man1
fasta.o: fasta.h
prefix_tree.o: prefix_tree.h global.h
main.o: fasta.h prefix_tree.h global.h
.SUFFIXES:
.PHONY: clean mrproper dist all
dist: all
$(MAKE) clean
strip $(TARGETS)
clean:
-rm -f $(OBJS)
mrproper: clean
-rm -r $(TARGETS)
|
