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patman 1.2.2%2Bdfsg-5
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PatMaN: Pattern Matching in Nucleotide data bases 

PatMaN compares a set of short patterns against one or more sequence
databases.  Patterns can match with an arbitrary (but generally small)
number of mismatches and/or gaps given as arguments.  See the man page
for details.

To install into your home directory, simply call 'make install'.  You
can call 'make install prefix=dir' to install into 'dir' instead.  To
compile, a reasonable C++ compiler and the popt library are needed.