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Source: pbalign
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Afif Elghraoui <afif@debian.org>
Section: python
Testsuite: autopkgtest-pkg-python
Priority: optional
Build-Depends: debhelper (>= 11~),
dh-python,
python-all,
python-setuptools,
python-pbcore,
python-pbcommand,
python3-sphinx,
python-nose
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/pbalign
Vcs-Git: https://salsa.debian.org/med-team/pbalign.git
Homepage: https://github.com/PacificBiosciences/pbalign
Package: pbalign
Architecture: all
Depends: ${misc:Depends},
${python:Depends},
python-pbalign (= ${source:Version}),
python-pkg-resources,
blasr (>= 5.3+0)
Recommends: python-pbh5tools,
hdf5-tools
Suggests: bowtie2,
gmap,
pbalign-doc
Description: map Pacific Biosciences reads to reference DNA sequences
pbalign aligns PacBio reads to reference sequences, filters aligned
reads according to user-specific filtering criteria, and converts the
output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
format.
.
This package is part of the SMRTAnalysis suite.
Package: python-pbalign
Architecture: all
Depends: ${misc:Depends},
${python:Depends},
blasr (>= 5.3+0)
Recommends: python-pbh5tools,
hdf5-tools
Suggests: bowtie2,
gmap,
pbalign-doc
Description: map Pacific Biosciences reads to reference DNA sequences (Python2)
pbalign aligns PacBio reads to reference sequences, filters aligned
reads according to user-specific filtering criteria, and converts the
output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
format.
.
pbalign is part of the SMRTAnalysis suite. This package provides the
Python library backend.
Package: pbalign-doc
Architecture: all
Section: doc
Depends: ${misc:Depends},
libjs-jquery,
libjs-underscore
Description: documentation for pbalign
pbalign aligns PacBio reads to reference sequences, filters aligned
reads according to user-specific filtering criteria, and converts the
output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
format.
.
pbalign is part of the SMRTAnalysis suite. This package contains its
documentation
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