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#!/usr/bin/env bash
set -vex
########
# TEST #
########
type module >& /dev/null || . /mnt/software/Modules/current/init/bash
# Note: htslib v1.7 added native long CIGAR support. pbbam "spoofs" it
# when running <1.7. So we'll always check the default htslib for
# general test success/fail, and then check pre-/post-v1.7 explicitly
# to ensure we pass in either context (detectable at runtime).
# default htslib
ninja -C "${CURRENT_BUILD_DIR:-build}" -v test
# explicit htslib v1.6
module unload htslib
module load htslib/1.6
ninja -C "${CURRENT_BUILD_DIR:-build}" -v test
# explicit htslib v1.7
module unload htslib
module load htslib/1.7
ninja -C "${CURRENT_BUILD_DIR:-build}" -v test\
# restore default
module unload htslib
module load htslib
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