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#!/usr/bin/make -f
#DH_VERBOSE = 1
export LC_ALL=C.UTF-8
include /usr/share/dpkg/default.mk
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
DEB_VERSION_UPSTREAM := $(subst +ds,,$(DEB_VERSION_UPSTREAM))
generated_data_dir = $(CURDIR)/gendata
%:
dh $@ --buildsystem=meson
override_dh_auto_test: $(subst .t.in,.deb.t,$(wildcard tests/src/cram/pb*.t.in))
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
dh_auto_configure -O--buildsystem=meson
mkdir -p $(generated_data_dir)
python tests/scripts/generate_data.py $(CURDIR)/tests/data $(generated_data_dir)
# Fix broken PATH
synthetic_movie_all_path=`find $$PWD -name synthetic_movie_all.subreadset.xml` ; \
sed -i -e "s?.GENERATEDDATADIR/synthetic_movie_all.subreadset.xml?$${synthetic_movie_all_path}?" tests/src/cram/pbbamify*
BINDIR=`dirname $$(find $$PWD -name pbmerge -type f -executable)`; \
LIBDIR=`find $$PWD -name lib -type d`; \
PATH="$$BINDIR:$(PATH)" LD_LIBRARY_PATH="$$LIBDIR:$(LD_LIBRARY_PATH)" \
cram -v --preserve-env $^
endif
override_dh_installchangelogs:
dh_installchangelogs CHANGELOG.md
override_dh_auto_clean:
dh_auto_clean
find -name "*.deb.t" -delete
$(RM) -r $(generated_data_dir)
%.deb.t: %.t.in
sed \
-e 's/$$BAM2SAM/samtools view/g' \
-e 's/\-\-header\-only/-H/g' \
-e 's/\-\-no\-header//g' \
-e 's|@PacBioBAM_BinDir@/||g' \
-e 's|$$TOOLS_BIN/||g' \
-e 's|@PacBioBAM_TestsDir@|$(CURDIR)/tests|g' \
-e 's|@PacBioBAM_VERSION@|$(DEB_VERSION_UPSTREAM)|g' \
-e 's|@GeneratedTestDataDir@|$(generated_data_dir)|g' \
-e '/@PG/s|+dfsg||g' \
-e 's/$$SAMTOOLS/samtools/g' \
$< > $@
override_dh_install:
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--exclude-a \
--override s/libhts2-dev/libhts-dev/ \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/$(DEB_HOST_MULTIARCH)/pkgconfig \
debian/tmp/usr/lib/*/*.so
|
