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#!/usr/bin/make -f
#DH_VERBOSE = 1
export LC_ALL=C.UTF-8
include /usr/share/dpkg/default.mk
DEB_VERSION_UPSTREAM := $(subst +ds,,$(DEB_VERSION_UPSTREAM))
generated_data_dir = $(CURDIR)/gendata
%:
dh $@
override_dh_auto_configure:
dh_auto_configure -- \
-DPacBioBAM_build_shared=ON \
-DPacBioBAM_build_tests=OFF \
-DCMAKE_LIBRARY_PATH=$(DEB_HOST_MULTIARCH) \
-DCMAKE_SKIP_RPATH=ON \
-DHTSLIB_INCLUDE_DIRS=/usr/include \
-DHTSLIB_LIBRARIES="-lssl -lcrypto -lhts" \
-DCMAKE_SHARED_LINKER_FLAGS="$(LDFLAGS)"
# -DPacBioBAM_wrap_python=ON \
# -DPacBioBAM_wrap_r=ON
override_dh_auto_test: $(subst .t.in,.deb.t,$(wildcard tests/src/cram/pb*.t.in))
mkdir -p $(generated_data_dir)
python tests/scripts/generate_data.py $(CURDIR)/tests/data $(generated_data_dir)
BINDIR=`find $$PWD -name bin -type d`; \
LIBDIR=`find $$PWD -name lib -type d`; \
PATH="$$BINDIR:$(PATH)" LD_LIBRARY_PATH="$$LIBDIR:$(LD_LIBRARY_PATH)" \
cram -v $^
override_dh_installchangelogs:
dh_installchangelogs CHANGELOG.md
override_dh_auto_clean:
dh_auto_clean
find -name "*.deb.t" -delete
$(RM) -r $(generated_data_dir)
%.deb.t: %.t.in
sed \
-e 's/$$BAM2SAM/samtools view/g' \
-e 's/\-\-header\-only/-H/g' \
-e 's/\-\-no\-header//g' \
-e 's|@PacBioBAM_BinDir@/||g' \
-e 's|$$TOOLS_BIN/||g' \
-e 's|@PacBioBAM_TestsDir@|$(CURDIR)/tests|g' \
-e 's|@PacBioBAM_VERSION@|$(DEB_VERSION_UPSTREAM)|g' \
-e 's|@GeneratedTestDataDir@|$(generated_data_dir)|g' \
$< > $@
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