File: BarcodeQuery.txt

package info (click to toggle)
pbbam 0.7.4%2Bds-1
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 10,384 kB
  • ctags: 5,236
  • sloc: cpp: 48,068; python: 1,444; xml: 852; ansic: 820; makefile: 175; sh: 52; cs: 12
file content (17 lines) | stat: -rw-r--r-- 464 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
// using C++11 range-based for loop
BarcodeQuery query(42, dataset);
for (const BamRecord& r : query) {
    assert(r.HasBarcodes());
    assert(r.BarcodeForward() == 42 || r.barcodeReverse() == 42);
}

// OR

// using iterators directly
BarcodeQuery query(42, dataset);
auto iter = query.cbegin();
auto end  = query.cend();
for (; iter != end; ++iter) {
    assert(iter->HasBarcodes());
    assert(iter->BarcodeForward() == 42 || iter->barcodeReverse() == 42);
}