File: PbiBarcodeFilter.txt

package info (click to toggle)
pbbam 0.7.4%2Bds-1
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 10,384 kB
  • ctags: 5,236
  • sloc: cpp: 48,068; python: 1,444; xml: 852; ansic: 820; makefile: 175; sh: 52; cs: 12
file content (17 lines) | stat: -rw-r--r-- 577 bytes parent folder | download | duplicates (7)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
// single value
PbiFilter filter{ PbiBarcodeFilter{17} };
PbiFilterQuery query(filter);
for (const BamRecord& record : query) {
    const auto barcodes = record.Barcodes();
    assert(barcodes.first == 17 || barcodes.second == 17);
}

// whitelist
vector<int16_t> whitelist = { 50, 100 };
PbiFilter filter{ PbiBarcodeFilter{whitelist} };
PbiFilterQuery query(filter);
for (const BamRecord& record : query) {
    const auto barcodes = record.Barcodes();
    assert(barcodes.first == 50  || barcodes.second == 50 ||
           barcodes.first == 100 || barcodes.second == 100);
}