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Source: pbbam
Section: libs
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Afif Elghraoui <afif@debian.org>
Build-Depends:
debhelper (>= 10),
dh-exec,
cmake,
python,
# swig3.0,
libboost-dev (>= 1.54),
zlib1g-dev,
libssl-dev,
libhts-dev,
# Test-Depends:
# libgtest-dev,
python-cram,
samtools,
Standards-Version: 3.9.8
Homepage: http://pbbam.readthedocs.org/en/latest/index.html
Vcs-Git: https://anonscm.debian.org/git/debian-med/pbbam.git
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pbbam.git
Package: pbbamtools
Section: science
Architecture: any
Depends:
${shlibs:Depends},
${misc:Depends},
libpbbam (= ${binary:Version}),
Recommends: samtools
Description: processing Pacific Biosciences binary alignment/map files
The BAM format is a binary, compressed, record-oriented container format
for raw or aligned sequence reads. The associated SAM format is a text
representation of the same data. The specifications for BAM/SAM are maintained
by the SAM/BAM Format Specification Working Group.
.
PacBio-produced BAM files are fully compatible with the BAM specification,
but makes use of the extensibility mechanisms of the BAM specification to
encode PacBio-specific information.
.
This package provides command-line utilities for working with PacBio BAM
files.
Package: libpbbam
Architecture: any
Multi-Arch: same
Pre-Depends:
${misc:Pre-Depends}
Depends:
${shlibs:Depends},
${misc:Depends},
Description: Pacific Biosciences binary alignment/map (BAM) library
The BAM format is a binary, compressed, record-oriented container format
for raw or aligned sequence reads. The associated SAM format is a text
representation of the same data. The specifications for BAM/SAM are maintained
by the SAM/BAM Format Specification Working Group.
.
PacBio-produced BAM files are fully compatible with the BAM specification,
but makes use of the extensibility mechanisms of the BAM specification to
encode PacBio-specific information. The pbbam library provides tools to
work with these files
Package: libpbbam-dev
Section: libdevel
Architecture: any
Depends:
libpbbam (= ${binary:Version}),
libhts-dev,
libssl-dev,
${misc:Depends},
Description: Pacific Biosciences binary alignment/map (BAM) library (headers)
The BAM format is a binary, compressed, record-oriented container format
for raw or aligned sequence reads. The associated SAM format is a text
representation of the same data. The specifications for BAM/SAM are maintained
by the SAM/BAM Format Specification Working Group.
.
PacBio-produced BAM files are fully compatible with the BAM specification,
but makes use of the extensibility mechanisms of the BAM specification to
encode PacBio-specific information. The pbbam library provides tools to
work with these files
.
This package contains the library header files.
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