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#!/usr/bin/env bash
set -vex
#########
# BUILD #
#########
# on PA, need to first build pbcopper+htslib
if [[ ${GCC_VERSION} == PA ]]; then
pushd _deps/pbcopper
meson \
--default-library static \
--libdir lib \
--wrap-mode nofallback \
--prefix "${bamboo_build_working_directory}/staging" \
-Dtests=false \
build .
ninja -C build -v install
popd
wget https://github.com/samtools/htslib/releases/download/1.10.2/htslib-1.10.2.tar.bz2
tar -xjf htslib-1.10.2.tar.bz2
pushd htslib-1.10.2
CFLAGS="-O3" ./configure \
--prefix="${bamboo_build_working_directory}/staging" \
--libdir="${bamboo_build_working_directory}/staging/lib" \
--disable-bz2 \
--disable-gcs \
--disable-libcurl \
--disable-lzma \
--disable-plugins \
--disable-s3
make -j install
# clean out unneeded cruft and shared libs,
# as -lhts will prefer shared libraries
rm -rf ${bamboo_build_working_directory}/staging/{bin,share}
rm -f ${bamboo_build_working_directory}/staging/lib/*.so*
# set pkg-config variables
export PKG_CONFIG_LIBDIR+=":${bamboo_build_working_directory}/staging/lib/pkgconfig"
# convert `-I` to `-isystem` in pkg-config file in order not to trigger -Werror
sed -e 's/-I/-isystem/g' -i "${bamboo_build_working_directory}/staging/lib/pkgconfig/htslib.pc"
popd
fi
# configure
# '--wrap-mode nofallback' prevents meson from downloading
# stuff from the internet or using subprojects.
meson \
--werror \
--buildtype "${BUILDTYPE:-release}" \
--default-library "${LIBRARYTYPE:-shared}" \
--libdir lib \
--unity "${ENABLED_UNITY_BUILD:-off}" \
--wrap-mode "${ENABLED_WRAP_MODE:-nofallback}" \
--prefix "${PREFIX_ARG:-/}" \
-Db_coverage="${ENABLED_COVERAGE:-false}" \
-Db_lto="${ENABLED_LTO:-false}" \
-Db_sanitize="${ENABLED_SANITIZERS:-none}" \
-Db_lundef="${ENABLED_LUNDEF:-true}" \
-Dcpp_debugstl="${ENABLED_DEBUGSTL:-false}" \
-Dtests="${ENABLED_TESTS:-false}" \
"${CURRENT_BUILD_DIR:-build}" .
# build
ninja -C "${CURRENT_BUILD_DIR:-build}" -v
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