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<pbds:SubreadSet CreatedAt="2019-10-25T21:48:44.711Z" MetaType="PacBio.DataSet.SubreadSet" Name="Hydrav2-8A-2-Cell2" Tags="subreadset" TimeStampedName="54076-SubreadSetCollection-2019-46-25T22:46:25.102Z" UniqueId="7e8f7728-8acc-42ad-8652-071b784d9d0f" Version="4.0.1" xmlns="http://pacificbiosciences.com/PacBioDatasets.xsd" xmlns:pbbase="http://pacificbiosciences.com/PacBioBaseDataModel.xsd" xmlns:pbdm="http://pacificbiosciences.com/PacBioDataModel.xsd" xmlns:pbds="http://pacificbiosciences.com/PacBioDatasets.xsd" xmlns:pbmeta="http://pacificbiosciences.com/PacBioCollectionMetadata.xsd" xmlns:pbpn="http://pacificbiosciences.com/PacBioPartNumbers.xsd" xmlns:pbrk="http://pacificbiosciences.com/PacBioReagentKit.xsd" xmlns:pbsample="http://pacificbiosciences.com/PacBioSampleInfo.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pacificbiosciences.com/PacBioSecondaryDataModel.xsd">
<pbbase:ExternalResources>
<pbbase:ExternalResource Description="Points to the subreads bam file." MetaType="PacBio.SubreadFile.SubreadBamFile" Name="subreads bam" ResourceId="m54076_191026_052249.subreads.bam" TimeStampedName="pacbio_subreadfile_subreadbamfile-191026_154539117" UniqueId="3bc054cb-0a2b-4ee0-b627-d4ca3bf3c424" Version="4.0.1">
<pbbase:FileIndices>
<pbbase:FileIndex MetaType="PacBio.Index.PacBioIndex" ResourceId="m54076_191026_052249.subreads.bam.pbi" TimeStampedName="pacbio_index_pacbioindex-191026_154539117" UniqueId="5b3f2c5c-40f5-435d-b061-3c3961509dce" Version="4.0.1" />
</pbbase:FileIndices>
<pbbase:ExternalResources>
<pbbase:ExternalResource Description="Points to the scraps bam file." MetaType="PacBio.SubreadFile.ScrapsBamFile" Name="scraps bam" ResourceId="m54076_191026_052249.scraps.bam" TimeStampedName="pacbio_subreadfile_scrapsbamfile-191026_154539128" UniqueId="e81f0e9e-76f8-4b71-adee-10414cb354f0" Version="4.0.1">
<pbbase:FileIndices>
<pbbase:FileIndex MetaType="PacBio.Index.PacBioIndex" ResourceId="m54076_191026_052249.scraps.bam.pbi" TimeStampedName="pacbio_index_pacbioindex-191026_154539128" UniqueId="2f384dcb-6a42-4a77-be3b-d9f4002301fb" Version="4.0.1" />
</pbbase:FileIndices>
</pbbase:ExternalResource>
<pbbase:ExternalResource Description="Points to the adapters.fasta file." MetaType="PacBio.SubreadFile.AdapterFastaFile" Name="Adapters FASTA" ResourceId="m54076_191026_052249.adapters.fasta" TimeStampedName="pacbio_subreadfile_adapterfastafile-191026_154539128" UniqueId="b9017375-313a-4ed1-85f7-a4558a01512a" Version="4.0.1" />
<pbbase:ExternalResource Description="Points to the summary sts.xml file." MetaType="PacBio.SubreadFile.ChipStatsFile" Name="Chipstats XML" ResourceId="m54076_191026_052249.sts.xml" TimeStampedName="pacbio_subreadfile_chipstatsfile-191026_154539128" UniqueId="43b390ce-4160-4959-ad72-a232362edf77" Version="4.0.1" />
</pbbase:ExternalResources>
</pbbase:ExternalResource>
</pbbase:ExternalResources>
<pbds:DataSetMetadata>
<pbds:TotalLength>11047559446</pbds:TotalLength>
<pbds:NumRecords>5119037</pbds:NumRecords>
<Collections xmlns="http://pacificbiosciences.com/PacBioCollectionMetadata.xsd">
<CollectionMetadata CreatedAt="2019-10-25T21:48:44.711Z" ModifiedAt="0001-01-01T00:00:00" UniqueId="7e8f7728-8acc-42ad-8652-071b784d9d0f" MetaType="CollectionMetadata" TimeStampedName="54076-CollectionMetadata-2019-46-25T22:46:25.102Z" Status="Ready" InstrumentId="54076" InstrumentName="Sequel-54076" Context="m54076_191026_052249">
<InstCtrlVer>6.0.0.46934</InstCtrlVer>
<SigProcVer>6.0.0.47712</SigProcVer>
<RunDetails>
<TimeStampedName>r54076_20191025_224625</TimeStampedName>
<Name>3360004_54076_Hydrav2_8A_QC</Name>
<CreatedBy>hyu</CreatedBy>
<WhenCreated>2019-10-25T21:48:44.711Z</WhenCreated>
<StartedBy>unknown</StartedBy>
<WhenStarted>0001-01-01T00:00:00</WhenStarted>
</RunDetails>
<WellSample Name="Hydrav2-8A-2" Description="LN016652" CreatedAt="2019-10-25T21:48:44.711Z" ModifiedAt="0001-01-01T00:00:00">
<WellName>B01</WellName>
<Concentration>0</Concentration>
<OnPlateLoadingConcentration>8</OnPlateLoadingConcentration>
<InsertSize>2600</InsertSize>
<SampleReuseEnabled>false</SampleReuseEnabled>
<StageHotstartEnabled>false</StageHotstartEnabled>
<SizeSelectionEnabled>false</SizeSelectionEnabled>
<UseCount>0</UseCount>
<DNAControlComplex>Sequel® DNA Internal Control 3.0</DNAControlComplex>
</WellSample>
<Automation Name="Workflow_Diffusion.py">
<AutomationParameters xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">
<AutomationParameter Name="ReuseSample" CreatedAt="2019-10-25T21:48:44.711Z" ModifiedAt="0001-01-01T00:00:00" ValueDataType="String" SimpleValue="False" />
<AutomationParameter Name="ImmobilizationTime" CreatedAt="2019-10-25T21:48:44.711Z" ModifiedAt="0001-01-01T00:00:00" ValueDataType="Double" SimpleValue="120" />
<AutomationParameter Name="ExtendFirst" CreatedAt="2019-10-25T21:48:44.711Z" ModifiedAt="0001-01-01T00:00:00" ValueDataType="Boolean" SimpleValue="True" />
<AutomationParameter Name="ExtensionTime" CreatedAt="2019-10-25T21:48:44.711Z" ModifiedAt="0001-01-01T00:00:00" ValueDataType="Double" SimpleValue="60" />
<AutomationParameter Name="MovieLength" CreatedAt="2019-10-25T21:48:44.711Z" ModifiedAt="0001-01-01T00:00:00" ValueDataType="Double" SimpleValue="360" />
<AutomationParameter Name="CellNFCIndex" ValueDataType="Int32" SimpleValue="1" />
<AutomationParameter Name="ExtraIMWashes" ValueDataType="Int32" SimpleValue="2" />
<AutomationParameter Name="Exposure" ValueDataType="Double" SimpleValue="0.01" />
<AutomationParameter Name="PCDinPlate" ValueDataType="Boolean" SimpleValue="True" />
<AutomationParameter Name="PreExtensionWorkflow" ValueDataType="Boolean" SimpleValue="True" />
<AutomationParameter Name="CollectionNumber" ValueDataType="Int32" SimpleValue="1" />
<AutomationParameter Name="UseStageHotStart" ValueDataType="Boolean" SimpleValue="False" />
<AutomationParameter Name="InsertSize" ValueDataType="Int32" SimpleValue="2600" />
<AutomationParameter Name="HasN2Switch" ValueDataType="Boolean" SimpleValue="False" />
<AutomationParameter Name="TipSearchMaxDuration" ValueDataType="Int32" SimpleValue="576" />
<AutomationParameter Name="SNRCut" ValueDataType="Double" SimpleValue="3.75" />
</AutomationParameters>
</Automation>
<CollectionNumber>1</CollectionNumber>
<CellIndex>1</CellIndex>
<SetNumber>0</SetNumber>
<CellPac Name="SMRT® Cell 1M v3 (4/Pack)" Description="Individual 4 Pack containing 4 SMRT®Cells each containing 1 million ZMWs" Version="3.0" PartNumber="101-531-000" LotNumber="324339" Barcode="CA039727" ExpirationDate="2019-12-18">
<ChipLayout xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">SequEL_4.0_RTO3</ChipLayout>
</CellPac>
<ControlKit Name="Sequel® DNA Internal Control 3.0" Description="The Sequel DNA Internal Control 3.0 contains a fixed template of 2 kb length bound to Sequel Binding Kit 3.0 for use as an internal sequencing control. Reagent quantities provide spike-in controls for a minimum of 24 samples." Tags="Control Kit, CCK" Version="3.0" PartNumber="101-500-300" LotNumber="Lxxxxx" Barcode="Lxxxxx101500300123199" ExpirationDate="2099-12-31" ChipType="1mChip">
<CustomSequence xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">>left_adapter\nTAGAGAGAGAAAAGGAGGAGGAGGCAACAACAACAACTCTCTCTA\n>right_adapter\nTAGAGAGAGAAAAGGAGGAGGAGGCAACAACAACAACTCTCTCTA\n>custom_sequence\nTGTCTAGGTCATCTCAACGTAGCTTTGACATATAACTTATCTAAAGTAATCCCTGCACACCTGTATGCATTATGCTTGCTATACACGCGGACACAGGCATATCATTTATTTTTTGCCATGTCCATTAATTGTTCAATAATTTTACTCACGGTATTTAATTTGATGTTGTGTTATATAGAATTGGAATTAAACTTATAAGGATGCTTAGACGTTGCATTATAAAAGTTTATGTACTAAGTATTTAAGACATTGGCATATGATTATAGCTTGACATTATTAAAAATTAATTAATTAAATCTCACACAATACTTATTCAAGACATTTTTACTAAGATAACCAAAGGAATGCGAACAAAATAATACTTAAAATATAAGACTTAGAAGTAATATGATCCAATAGTTACATATAGTACACTAAGTTCCTAAATTATATAACTTTAAAACAAAGTTACGAAATTTGGAAATAATTTTATTTAATCATATTTTCATAATAATGAAATACTGTTTATTTCAGTGGCGAAAAGAGATAATACGATTTTATAGTGATAGAATATCCTTGAAATATCTAAAGATAAAATTAGAAACTTTCTCTTTTCGCTGTAAAGCTATATGACTTAAAAATAACTTATACGCAAAGTATATTGCAGTGGAAACCCAAGAGTATAGTAGCCATGTAATCTCGGGTTCGAAACTACACGCCGCGCACGTAGTCAGATGGTCTGAAACTTGTCTGGGGCTGTTTGTTGACGGATGGAGACTTCACTAAGTGGCGTCAGGCGATGCGCACACACGGGACTCAATCCCGTAGCATGTTATGTGTCGTTCGAAACTCGTGCGTTCGAGATTTACGCCACATTGCCGGCTGGTCCAAGGACGTTATCTACCAGATGATACGGTCCAATTCGTAAGTTTGACTCACATAGTCGCGAACCGCGGAGCTGGAGAACAATAATTACCGGATGATTAGTTGACCATACGCACTATCATGCTCCGTGACTCAGTTTCCGCCATGGAGTTCTCACAGCCCCGTGTGTACCATAACTGCAGTAAGTAAGGACCTTGTTCGGAGGCCGACTCGTATTTCATATGATCTTAGTCTCGCCACCTTATCGCACGAATTGGGGGTGTCTTTTAGCCGACTCCGGCACGATCCGCCGGGAAGTTACTCGACCAGTTGCGGGACGCCCTAGTATGTTCGTATTACGTTCGATGCGTAAGCACCCCAGAGATTTTTGGCGGACGTTTCGGTAAATCATAGTAGAACCGGAGCGGTAAAGCTATTGATAACACGCAGGGACGAGCCAGTCGTCTAAGCTCCTCAGGGGTACCGTTCGCCGGACTACAGCCTGTCCCCGGCGGCCGCAACTGGGCTGCGATCCAGCCCCCGCTCCAAAAGGATGACTCGACCTTGCGCCTCGCGTACTCTGCTCTCGAGCTGTCTCCGTGGGCAATGCCGGCTCACGCTGTGGGGAACCCTGGACGCCCGGGCCGAGCCGACGTGGCCCCGCCCAGGCCTTTTCGTCGATCGCAGCTATGTACCCTGTGCTGGCCAGCGCTACTGCGCCGGCCATTAGCGGTGCGCTCTCGACTCGGCCCCAACGTAGACGGCGTCGCTGGCCGGATTCAAAGAAGTGAGCTACTACCATCGCGTGACGCCCTGCGGGCCTGAGTAACCGTGCACGAAGGACACCCCGTTCGTGGCGGGGGTTGCCTCCGCGACGGTCGCCAACGTTGGGGGTCGGTGCATTCAGGCGACGAGGGACCGCTGGTTTCCGGAGAGCGGCCTGTGCTCACACAGGTGCGGTCCATGGGGCCTGTGGATCCGGTTCTCCCACGCGTAGCGCCGGCGTTAGCATGGACGCTAAATAAGTATACGCCGGCAAAGGGAGTGTAGGCCGGCCCGAGGGCAATCGCGGTTACCGGGGTGGGGGAGCTCCCCGCACCAGCCTTGATGTGGTGTGCGAGCG</CustomSequence>
</ControlKit>
<TemplatePrepKit Name="SMRTbell® Express Template Prep Kit 2.0" Description="The SMRTbell® Template Prep Kit contains reagent supplies to perform 96 automated SMRTbell non-size-selected library preparations of primer-annealed SMRTbell libraries for insert sizes ranging from 500 bp to over 20 kb. Reagents come in 4 x 24 reaction sets." Tags="Template Prep Kit, TPK" Version="2.0" PartNumber="100-938-900" LotNumber="Lxxxxx" Barcode="Lxxxxx100938900123199" ExpirationDate="2099-12-31" MinInsertSize="500" MaxInsertSize="20000">
<LeftAdaptorSequence xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">ATCTCTCTCAACAACAACAACGGAGGAGGAGGAAAAGAGAGAGAT</LeftAdaptorSequence>
<LeftPrimerSequence xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">aacggaggaggagga</LeftPrimerSequence>
<RightAdaptorSequence xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">ATCTCTCTCAACAACAACAACGGAGGAGGAGGAAAAGAGAGAGAT</RightAdaptorSequence>
<RightPrimerSequence xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">aacggaggaggagga</RightPrimerSequence>
</TemplatePrepKit>
<BindingKit Name="Sequel® Binding Kit 3.0" Description="The Sequel Binding Kit 3.0 contains reagent supplies to bind prepared DNA template libraries to the Sequel Polymerase 3.0 in preparation for sequencing on the Sequel System. The result is a DNA polymerase/template complex. Sequel Binding Kit 3.0 should be used only with Sequel Sequencing Kit 3.0. Reagent quantities support 24 binding reactions." Tags="Binding Kit, BDK" Version="3.0" PartNumber="101-500-400" LotNumber="Lxxxxx" Barcode="Lxxxxx101500400123199" ExpirationDate="2099-12-31" ChipType="1mChip" />
<SequencingKitPlate Name="Sequel® Sequencing Plate 3.0 (4 rxn)" Description="The DNA Sequencing Kit contains a sequencing reagent plate with chemistry for single molecule real-time sequencing on the PacBio Sequel®. Reagent quantities support 4 sequencing reactions to be used in conjunction with SMRT® Cell 4Pac(s). (4 Cells max/Each Row supplies reagents for 1 Sequel SMRT Cell)" Tags="Sequencing Kit, SQK" Version="3.0" PartNumber="101-427-800" LotNumber="016160" Barcode="016160101427800080420" ExpirationDate="2020-08-04" ChipType="1mChip" MaxCollections="4" NumOseTubes="0">
<ReagentTubes Name="Sequel® SMRT®Cell Oil" PartNumber="100-619-600" LotNumber="013898" Barcode="013898100619600113020" ExpirationDate="2020-11-30" xmlns="http://pacificbiosciences.com/PacBioReagentKit.xsd" />
</SequencingKitPlate>
<Primary>
<AutomationName>SequelAlpha</AutomationName>
<ConfigFileName>SqlPoC_SubCrf_2C2A-t2.xml</ConfigFileName>
<SequencingCondition>DefaultPrimarySequencingCondition</SequencingCondition>
<OutputOptions>
<ResultsFolder>336/3360004/r54076_20191025_224625/2_B01/</ResultsFolder>
<CollectionPathUri>/pbi/collections/336/3360004/r54076_20191025_224625/2_B01/</CollectionPathUri>
<CopyFiles>
<CollectionFileCopy>Fasta</CollectionFileCopy>
<CollectionFileCopy>Bam</CollectionFileCopy>
</CopyFiles>
<Readout>Bases</Readout>
<MetricsVerbosity>Minimal</MetricsVerbosity>
<TransferResource>
<Id>nfs-pbi-collections-test</Id>
<TransferScheme>RSYNC</TransferScheme>
<Name>NFS transfer to Xter test</Name>
<Description>Location for writing Transfer services to write to.</Description>
<DestPath>/pbi/collections</DestPath>
</TransferResource>
</OutputOptions>
</Primary>
<Secondary>
<AutomationName>DefaultSecondaryAutomationName</AutomationName>
<AutomationParameters>
<AutomationParameter Name="Reference" CreatedAt="0001-01-01T00:00:00" ModifiedAt="0001-01-01T00:00:00" ValueDataType="String" SimpleValue="DefaultSecondaryAnalysisReferenceName" />
</AutomationParameters>
<CellCountInJob>0</CellCountInJob>
</Secondary>
<UserDefinedFields>
<DataEntities Name=" LIMS_IMPORT " ValueDataType="String" SimpleValue="DefaultUserDefinedFieldLIMS" xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd" />
</UserDefinedFields>
<ComponentVersions>
<VersionInfo Name="ics" Version="6.0.0.46934" />
<VersionInfo Name="iui" Version="6.0.0.46934" />
<VersionInfo Name="chemistry" Version="6.0.0.45111" />
<VersionInfo Name="pa" Version="6.0.0.47712" />
<VersionInfo Name="paws" Version="6.0.0.47712" />
<VersionInfo Name="ppa" Version="6.0.0.47712" />
<VersionInfo Name="realtime" Version="6.0.0.47712" />
<VersionInfo Name="transfer" Version="6.0.0.47712" />
<VersionInfo Name="smrttools" Version="8.0.0.80502" />
<VersionInfo Name="smrtlink-analysisservices-gui" Version="8.0.0.80501" />
<VersionInfo Name="smrtlink" Version="8.0.0.80529" />
<VersionInfo Name="smrtimisc" Version="8.0.0.80529" />
<VersionInfo Name="smrtinub" Version="8.0.0.80499" />
</ComponentVersions>
</CollectionMetadata>
</Collections>
</pbds:DataSetMetadata>
</pbds:SubreadSet>
|
