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|
#!/usr/bin/env bash
set -vex
export ENABLED_TESTS="true"
case "${bamboo_planRepository_branchName}" in
master)
_pbcopper_module="pbcopper/master"
;;
*)
_pbcopper_module="pbcopper/develop"
;;
esac
case "${GCC_VERSION}" in
next)
module load gcc/8.1.0
module load gtest
module load ${_pbcopper_module}
;;
PA)
# have to build htslib for PA
module unload htslib
module load zlib
module load gtest/gcc48
# load SCL GCC
source /opt/rh/devtoolset-6/enable
export NEXUS_PROJECT=pacbio/seq/pa/pbbam
export NEXUS_TC=""
export _artifact_versionprepend="true"
;;
ICC*)
module load devtoolset/6
module load composer_xe/${GCC_VERSION#ICC}
module load gtest/gcc48
CC="icc"
CXX="icpc"
;;
clang)
module load gtest/gcc48
source /opt/rh/llvm-toolset-6.0/enable
CC="clang"
CXX="clang++"
;;
*)
module load gcc
if [[ ${ENABLED_WRAP_MODE:-nofallback} == nofallback ]]; then
module load gtest
module load ${_pbcopper_module}
else
# don't want to rely on internet connectivity for CI
mkdir -p subprojects/packagecache
cp /mnt/software/m/meson/packagecache/gtest* subprojects/packagecache/
fi
;;
esac
module load ccache
export CC="ccache ${CC:-gcc}"
export CXX="ccache ${CXX:-g++}"
export CCACHE_BASEDIR="${PWD}"
if [[ ${GCC_VERSION} != ICC* ]]; then
# without -fno-sanitize-recover=all UBSAN failures won't abort the program
export CFLAGS="${CFLAGS} -fno-sanitize-recover=all"
export CXXFLAGS="${CXXFLAGS} -fno-sanitize-recover=all"
fi
if [[ -z ${bamboo_planRepository_branchName+x} ]]; then
: #pass
elif [[ ! -d /pbi/flash/bamboo/ccachedir ]]; then
echo "[WARNING] /pbi/flash/bamboo/ccachedir is missing"
elif [[ $bamboo_planRepository_branchName == develop ]]; then
export CCACHE_DIR=/pbi/flash/bamboo/ccachedir/${bamboo_shortPlanKey}.${bamboo_shortJobKey}.develop
export CCACHE_TEMPDIR=/scratch/bamboo.ccache_tempdir
elif [[ $bamboo_planRepository_branchName == master ]]; then
export CCACHE_DIR=/pbi/flash/bamboo/ccachedir/${bamboo_shortPlanKey}.${bamboo_shortJobKey}.master
export CCACHE_TEMPDIR=/scratch/bamboo.ccache_tempdir
elif [[ $USER == bamboo ]]; then
_shortPlanKey=$(echo ${bamboo_shortPlanKey}|sed -e 's/[0-9]*$//')
export CCACHE_DIR=/pbi/flash/bamboo/ccachedir/${bamboo_shortPlanKey}.${bamboo_shortJobKey}
if [[ -d /pbi/flash/bamboo/ccachedir/${_shortPlanKey}.${bamboo_shortJobKey}.develop ]]; then
( cd /pbi/flash/bamboo/ccachedir/
cp -a ${_shortPlanKey}.${bamboo_shortJobKey}.develop $CCACHE_DIR
)
fi
export CCACHE_TEMPDIR=/scratch/bamboo.ccache_tempdir
fi
|
