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subdir('src')
pbbam_python = import('python').find_installation('python3')
pbbam_cram_script = find_program('cram', required : false)
if not pbbam_cram_script.found()
warning('Using bundled cram script')
pbbam_cram_script = find_program('scripts/cram.py')
endif
pbbam_gtest_dep = dependency(
'gtest',
main : true,
fallback : ['gtest', 'gtest_main_dep'])
pbbam_PbbamTestData_h_config = configuration_data()
pbbam_PbbamTestData_h_config.set('PacBioBAM_BinDir', join_paths([meson.current_build_dir(), '../tools']))
pbbam_PbbamTestData_h_config.set('PacBioBAM_TestsDir', meson.current_source_dir())
pbbam_PbbamTestData_h_config.set('CMAKE_CURRENT_BINARY_DIR', meson.current_build_dir())
pbbam_PbbamTestData_h_config.set('GeneratedDir', meson.current_build_dir())
pbbam_PbbamTestData_h_config.set('GeneratedTestDataDir', meson.current_build_dir())
pbbam_group_fofn_in = configure_file(
input : files('data/group/group.fofn.in'),
output : 'group.fofn',
configuration : pbbam_PbbamTestData_h_config)
pbbam_PbbamTestData_h = configure_file(
input : files('src/PbbamTestData.h.in'),
output : 'PbbamTestData.h',
configuration : pbbam_PbbamTestData_h_config)
pbbam_test_cpp_sources += pbbam_PbbamTestData_h
pbbam_test = executable(
'pbbam_test',
pbbam_test_cpp_sources,
dependencies : [pbbam_gtest_dep, pbbam_boost_dep, pbbam_htslib_dep, pbbam_zlib_dep, pbbam_pbcopper_dep],
include_directories : pbbam_include_directories,
link_with : pbbam_lib,
cpp_args : pbbam_warning_flags,
install : false)
custom_target('pbbam_generate_data',
output : 'input.fa',
command : [
pbbam_python,
files('scripts/generate_data.py'),
join_paths([meson.current_source_dir(), 'data']),
meson.current_build_dir()],
build_by_default : true,
install : false)
pbbamify_synthetic_dataset = configure_file(
input : files('data/pbbamify/synthetic_movie_all.subreadset.xml.in'),
output : 'synthetic_movie_all.subreadset.xml',
configuration : pbbam_PbbamTestData_h_config)
subdir('zero_byte_check')
#########
# tests #
#########
test(
'pbbam formatting check',
pbbam_clang_formatter,
args : [
'--all'],
workdir : meson.project_source_root())
test(
'pbbam gtest unittests',
pbbam_test,
args : [
'--gtest_output=xml:' + join_paths(meson.project_build_root(), 'pbbam-gtest-unittests.xml')],
env : [
'ARGS=-V',
'VERBOSE=1'])
test(
'pbbam zero-byte input check',
pbbam_cram_script,
args : [
'--xunit-file=' + join_paths(meson.project_build_root(), 'pbbam-cram-zero-byte-check.xml'),
'--verbose'] + files('src/cram/zero_byte_check.t'),
env : [
'__ZERO_BYTE_CHECK_EXE=' + pbbam_zero_byte_check.full_path(),
])
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