File: PbiFilterQuery.txt

package info (click to toggle)
pbbam 2.4.0%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 14,148 kB
  • sloc: cpp: 60,214; xml: 2,908; ansic: 660; sh: 275; python: 203; makefile: 187
file content (22 lines) | stat: -rw-r--r-- 558 bytes parent folder | download | duplicates (7)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
// setup filter
PbiFilter filter;
filter.Add(PbiZmwFilter(42));
filter.Add(PbiReadAccuracyFilter(0.9, Compare::GREATER_THAN_EQUAL));

// using C++11 range-based for loop
PbiFilterQuery query(filter, dataset);
for (const BamRecord& r : query) {
    assert(r.HoleNumber() == 42);
    assert(r.ReadAccuracy() >= 0.9);
}

// OR

// using iterators directly
PbiFilterQuery query(filter, dataset);
auto iter = query.cbegin();
auto end  = query.cend();
for (; iter != end; ++iter) {
    assert(iter->HoleNumber() == 42);
    assert(iter->ReadAccuracy() >= 0.9);
}