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// --------------------
// has adapter_before
// --------------------
PbiFilter filter{ PbiLocalContextFilter{LocalContextFlags::ADAPTER_BEFORE, Compare::CONTAINS} };
PbiFilterQuery query(filter);
for (const BamRecord& record : query) {
const bool hasAdapterBefore = (record.LocalContextFlags() & LocalContextFlags::ADAPTER_BEFORE) != 0;
assert(hasAdapterBefore);
}
// ----------------------------------
// has any adapters, barcodes, etc.
// ----------------------------------
PbiFilter filter{ PbiLocalContextFilter{LocalContextFlags::NO_LOCAL_CONTEXT, Compare::NOT_EQUAL} };
PbiFilterQuery query(filter);
for (const BamRecord& record : query) {
const bool hasContext = (record.LocalContextFlags() != LocalContextFlags::NO_LOCAL_CONTEXT);
assert(hasContext);
}
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