package info (click to toggle)
pbbam 2.4.0%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 14,148 kB
  • sloc: cpp: 60,214; xml: 2,908; ansic: 660; sh: 275; python: 203; makefile: 187

Folder: data

d .. (parent)
d d rwxr-xr-x 83 barcoded_movie_filter
d d rwxr-xr-x 51 bed
d d rwxr-xr-x 4,096 ccs-kinetics-bystrandify
d d rwxr-xr-x 4,096 chunking
d d rwxr-xr-x 4,096 csv
d d rwxr-xr-x 4,096 dataset
d d rwxr-xr-x 4,096 fastx
d d rwxr-xr-x 114 group
d d rwxr-xr-x 4,096 pbbamify
d d rwxr-xr-x 150 pbi_version
d d rwxr-xr-x 4,096 polymerase
d d rwxr-xr-x 4,096 read_groups
d d rwxr-xr-x 106 relative
d d rwxr-xr-x 4,096 run_metadata
d d rwxr-xr-x 80 segment
d d rwxr-xr-x 134 stitching
d d rwxr-xr-x 4,096 test_GenomicIntervals
d d rwxr-xr-x 118 test_group_query
d d rwxr-xr-x 87 vcf
d d rwxr-xr-x 50 zmws
- - rw-r--r-- 22,757 23.ccs.bam
- - rw-r--r-- 106 23.ccs.bam.pbi
- - rw-r--r-- 786 aligned.bam
- - rw-r--r-- 96 aligned.bam.bai
- - rw-r--r-- 168 aligned.bam.pbi
- - rw-r--r-- 1,634 aligned.sam
- - rw-r--r-- 22,511 aligned2.bam
- - rw-r--r-- 96 aligned2.bam.bai
- - rw-r--r-- 366 aligned2.bam.pbi
- - rw-r--r-- 498 barcoded_read_groups.bam
- - rw-r--r-- 126 barcoded_read_groups.bam.pbi
- - rw-r--r-- 259 chemistry.xml
- - rw-r--r-- 13,219 chimera_minimal.fasta
- - rw-r--r-- 511 clip_to_query.bam
- - rw-r--r-- 350 empty.bam
- - rw-r--r-- 67 empty.bam.pbi
- l rwxrwxrwx 12 lambdaNEB-missing-fai.fa → lambdaNEB.fa
- - rw-r--r-- 49,125 lambdaNEB.fa
- - rw-r--r-- 30 lambdaNEB.fa.fai
- - rw-r--r-- 191,942 long-cigar-1.7.bam
- - rw-r--r-- 2,592,334 long_reads.bam
- - rw-r--r-- 25 merge.fofn
- - rw-r--r-- 71,653 phi29.bam
- - rw-r--r-- 1,394 phi29.bam.pbi
- - rw-r--r-- 2,073 referenceset.xml
- - rw-r--r-- 186,891 refskip.bam
- - rw-r--r-- 425 segfault.bam
- - rw-r--r-- 2,240 softclip_deletions.bam
- - rw-r--r-- 330 transcript.subreads.bam
- - rw-r--r-- 107 transcript.subreads.bam.pbi
- - rw-r--r-- 1,662 transcriptset.xml
- - rw-r--r-- 484 unmap1.bam
- - rw-r--r-- 72 unmap1.bam.bai
- - rw-r--r-- 1,344 unmap2.bam
- - rw-r--r-- 144 unmap2.bam.bai
- - rw-r--r-- 0 zero_bytes.bam
- - rw-r--r-- 0 zero_bytes.sam