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<?xml version="1.0" encoding="UTF-8"?>
<pbds:SubreadSet CreatedAt="2018-10-18T18:59:06.485Z" MetaType="PacBio.DataSet.SubreadSet" Name="pacbio_dataset_subreadset-181018_185906485" Tags="" TimeStampedName="pacbio_dataset_subreadset-181018_185906485" UniqueId="eb7d10f4-c9fe-4dd0-8121-82ee8cc93c2c" Version="3.0.1" xmlns:pbbase="http://pacificbiosciences.com/PacBioBaseDataModel.xsd" xmlns:pbds="http://pacificbiosciences.com/PacBioDatasets.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pacificbiosciences.com/PacBioDatasets.xsd">
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<pbbase:ExternalResource Description="Points to the subreads bam file." MetaType="PacBio.SubreadFile.SubreadBamFile" Name="subreads bam" ResourceId="/pbi/dept/primary/testdata/bam2bam_barcoded/barcodes.subreads.bam" TimeStampedName="pacbio_subreadfile_subreadbamfile-181018_185906495" UniqueId="c22ebc65-898d-42a1-9506-b28b8ef9386e" Version="">
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<pbbase:FileIndex MetaType="PacBio.Index.PacBioIndex" ResourceId="/pbi/dept/primary/testdata/bam2bam_barcoded/barcodes.subreads.bam.pbi" TimeStampedName="pacbio_index_pacbioindex-181018_185906495" UniqueId="ca6647ae-dae4-474c-9b30-cd109046569e" Version=""/>
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<pbbase:ExternalResource Description="Points to the scraps bam file." MetaType="PacBio.SubreadFile.ScrapsBamFile" Name="scraps bam" ResourceId="/pbi/dept/primary/testdata/bam2bam_barcoded/barcodes.scraps.bam" TimeStampedName="pacbio_subreadfile_scrapsbamfile-181018_185906506" UniqueId="74ff4e66-a1e6-42bc-b0ff-ac0c331f610f" Version="">
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<pbbase:FileIndex MetaType="PacBio.Index.PacBioIndex" ResourceId="/pbi/dept/primary/testdata/bam2bam_barcoded/barcodes.scraps.bam.pbi" TimeStampedName="pacbio_index_pacbioindex-181018_185906506" UniqueId="39ada2ba-3774-4c5e-ae33-8ec3ed8b01ae" Version=""/>
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<pbbase:ExternalResource Description="Points to the barcodes.fasta file." MetaType="PacBio.BarcodeFile.BarcodeFastaFile" Name="Barcodes FASTA" ResourceId="/pbi/dept/primary/testdata/bam2bam_barcoded/barcodes.fasta" TimeStampedName="pacbio_barcodefile_barcodefastafile-181018_185906506" UniqueId="0ff79e1e-4f5d-47d6-a9a9-572c523f9923" Version=""/>
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<CollectionMetadata CreatedAt="2019-12-17T01:12:33.796Z" ModifiedAt="0001-01-01T00:00:00" UniqueId="bed27671-c0f3-4154-bb58-85936a6051e4" MetaType="CollectionMetadata" TimeStampedName="64008-CollectionMetadata-2019-12-17T01:12:44.784Z" Status="Ready" InstrumentId="64008" InstrumentName="64008" Context="m54006_151205_021320">
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<TimeStampedName>r64008_20191217_011244</TimeStampedName>
<Name>2019-12-16_DarkFractionTesting_SpikePE_into_PCD</Name>
<CreatedBy>rdalal</CreatedBy>
<WhenCreated>2019-12-17T01:12:33.796Z</WhenCreated>
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<WellName>A01</WellName>
<Concentration>0</Concentration>
<OnPlateLoadingConcentration>2.5</OnPlateLoadingConcentration>
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<AutomationParameter Name="SNRCut" ValueDataType="Double" SimpleValue="1.5" />
<AutomationParameter Name="HQRFMethod" ValueDataType="String" SimpleValue="K1" />
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</Automation>
<CollectionNumber>0</CollectionNumber>
<CellIndex>0</CellIndex>
<SetNumber>0</SetNumber>
<CellPac Name="Sequel® II SMRT® Cell 8M (4/tray)" Description="Individual 4 Pack containing 4 SMRT®Cells each containing 7.76 million ZMWs" Version="1.0" PartNumber="101-389-001" LotNumber="411719" Barcode="DA017608" ExpirationDate="2019-10-14" MovieTimeGrade="LR">
<ChipLayout xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">Spider_1p0_NTO</ChipLayout>
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<TemplatePrepKit Name="SMRTbell® Template Prep Kit 1.0" Description="The SMRTbell® Template Prep Kit contains reagent supplies to perform SMRTbell library preparations of primer-annealed SMRTbell libraries for insert sizes ranging from 500 bp to over 20 kb." Tags="Template Prep Kit, TPK" Version="1.0" PartNumber="100-259-100" LotNumber="DM1234" Barcode="DM1234100259100123120" ExpirationDate="2020-12-31" MinInsertSize="500" MaxInsertSize="20000">
<LeftAdaptorSequence xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">ATCTCTCTCAACAACAACAACGGAGGAGGAGGAAAAGAGAGAGAT</LeftAdaptorSequence>
<LeftPrimerSequence xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">aacggaggaggagga</LeftPrimerSequence>
<RightAdaptorSequence xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">ATCTCTCTCAACAACAACAACGGAGGAGGAGGAAAAGAGAGAGAT</RightAdaptorSequence>
<RightPrimerSequence xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd">aacggaggaggagga</RightPrimerSequence>
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<BindingKit Name="Sequel® II Binding Kit 2.1" Description="The Sequel II Binding Kit 2.1 contains reagent supplies to bind prepared DNA template libraries to the Sequel Polymerase 2.0EA in preparation for sequencing on the Sequel System. The result is a DNA polymerase/template complex. Sequel II Binding Kit 2.1 should be used only with Sequel II Sequencing Kit 2.0. Reagent quantities support 24 binding reactions." Tags="Binding Kit, BDK" Version="1.0" PartNumber="101-820-500" LotNumber="DM1234" Barcode="DM1234101820500123120" ExpirationDate="2020-12-31" ChipType="8mChip" />
<SequencingKitPlate Name="Sequel® II Sequencing Plate 2.0 (4 rxn)" Description="The DNA Sequencing Kit contains a sequencing reagent plate with chemistry for single molecule real-time sequencing on the PacBio Sequel® Dev with Dynamic Loading. Reagent quantities support 4 sequencing reactions to be used in conjunction with SMRT® Cell 4Pac(s). (4 Cells max/Each Row supplies reagents for 1 Sequel SMRT Cell)" Tags="Sequencing Kit, SQK" Version="2.0" PartNumber="101-826-100" LotNumber="016840" Barcode="016840101826100073120" ExpirationDate="2020-07-31" ChipType="8mChip" MaxCollections="4">
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<ConfigFileName>SqlPoC_SubCrf_2C2A-t2.xml</ConfigFileName>
<SequencingCondition>DefaultPrimarySequencingCondition</SequencingCondition>
<OutputOptions>
<ResultsFolder>323/3230182/r64008_20191217_011244/1_A01/</ResultsFolder>
<CollectionPathUri>/pbi/collections/323/3230182/r64008_20191217_011244/1_A01/</CollectionPathUri>
<CopyFiles>
<CollectionFileCopy>Trace</CollectionFileCopy>
<CollectionFileCopy>Fasta</CollectionFileCopy>
<CollectionFileCopy>Bam</CollectionFileCopy>
<CollectionFileCopy>DarkFrame</CollectionFileCopy>
<CollectionFileCopy>StatsH5</CollectionFileCopy>
</CopyFiles>
<Readout>Bases_Without_QVs</Readout>
<MetricsVerbosity>Minimal</MetricsVerbosity>
<TransferResource>
<Id>rsync-pbi-collections</Id>
<TransferScheme>RSYNC</TransferScheme>
<Name>pbi collections</Name>
<Description>location for data transfer</Description>
<DestPath>/pbi/collections</DestPath>
</TransferResource>
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</Primary>
<Secondary>
<AutomationName>DefaultSecondaryAutomationName</AutomationName>
<AutomationParameters>
<AutomationParameter Name="Reference" CreatedAt="0001-01-01T00:00:00" ModifiedAt="0001-01-01T00:00:00" ValueDataType="String" SimpleValue="DefaultSecondaryAnalysisReferenceName" />
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<CellCountInJob>0</CellCountInJob>
</Secondary>
<UserDefinedFields>
<DataEntities Name=" LIMS_IMPORT " ValueDataType="String" SimpleValue="DefaultUserDefinedFieldLIMS" xmlns="http://pacificbiosciences.com/PacBioBaseDataModel.xsd" />
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</pbds:SubreadSet>
|
