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Source: pbbam
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Build-Depends: debhelper-compat (= 13),
dh-exec,
d-shlibs,
meson,
pkgconf,
cmake,
libboost-dev,
libboost-iostreams-dev,
zlib1g-dev,
libssl-dev,
libhts-dev,
libpbcopper-dev (>> 2.2.0),
python3-cram,
libgtest-dev,
samtools,
Standards-Version: 4.7.3
Vcs-Browser: https://salsa.debian.org/med-team/pbbam
Vcs-Git: https://salsa.debian.org/med-team/pbbam.git
Homepage: https://pbbam.readthedocs.org/en/latest/index.html
Package: pbbamtools
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
libpbbam2.4.0 (= ${binary:Version})
Recommends: samtools
Description: processing Pacific Biosciences binary alignment/map files
The BAM format is a binary, compressed, record-oriented container format
for raw or aligned sequence reads. The associated SAM format is a text
representation of the same data. The specifications for BAM/SAM are maintained
by the SAM/BAM Format Specification Working Group.
.
PacBio-produced BAM files are fully compatible with the BAM specification,
but makes use of the extensibility mechanisms of the BAM specification to
encode PacBio-specific information.
.
This package provides command-line utilities for working with PacBio BAM
files.
Package: libpbbam2.4.0
Architecture: any
Multi-Arch: same
Section: libs
Depends: ${shlibs:Depends},
${misc:Depends}
Pre-Depends: ${misc:Pre-Depends}
Breaks: libpbbam (<< ${source:Version})
Description: Pacific Biosciences binary alignment/map (BAM) library
The BAM format is a binary, compressed, record-oriented container format
for raw or aligned sequence reads. The associated SAM format is a text
representation of the same data. The specifications for BAM/SAM are maintained
by the SAM/BAM Format Specification Working Group.
.
PacBio-produced BAM files are fully compatible with the BAM specification,
but makes use of the extensibility mechanisms of the BAM specification to
encode PacBio-specific information. The pbbam library provides tools to
work with these files
Package: libpbbam-dev
Architecture: any
Multi-Arch: same
Section: libdevel
Depends: libpbbam2.4.0 (= ${binary:Version}),
${devlibs:Depends},
libssl-dev,
${misc:Depends}
Description: Pacific Biosciences binary alignment/map (BAM) library (headers)
The BAM format is a binary, compressed, record-oriented container format
for raw or aligned sequence reads. The associated SAM format is a text
representation of the same data. The specifications for BAM/SAM are maintained
by the SAM/BAM Format Specification Working Group.
.
PacBio-produced BAM files are fully compatible with the BAM specification,
but makes use of the extensibility mechanisms of the BAM specification to
encode PacBio-specific information. The pbbam library provides tools to
work with these files
.
This package contains the library header files.
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