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.. pbbam documentation master file, created by
sphinx-quickstart on Fri Dec 4 10:08:52 2015.
You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.
.. _home:
pbbam documentation
===================
As of the 3.0 release of SMRTanalysis, PacBio is embracing the industry standard BAM
format for (both aligned and unaligned) basecall data files. We have also formulated
a BAM companion file format (bam.pbi) enabling fast access to a richer set of per-read
information as well as compatibility for software built around the legacy cmp.h5 format.
The **pbbam** software package provides components to create, query, & edit PacBio BAM
files and associated indices. These components include a core C++ library, bindings for
additional languages, and command-line utilities.
.. toctree::
:maxdepth: 1
getting_started
api_reference
commandline_utilities
Search:
* :ref:`genindex`
* :ref:`search`
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