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[](https://travis-ci.org/PacificBiosciences/blasr_libcpp)
#What is blasr_libcpp#
**Blasr_libcpp** is a *library* used by **blasr** and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment:
+ pbdata
- contains source code for handling Pacbio sequences and can build lib ```libpbdata```.
+ hdf
- contains source code for handling Pacbio hdf5 files (e.g., *.pls.h5, *.rgn.h5, *.bas.h5) and builds ```libpbhdf```.
+ alignment
- contains source code for aligning Pacbio reads to target sequences used in blasr and builds ```libblasr```.
For more information, see
* https://github.com/PacificBiosciences/blasr_libcpp/wiki
## Building
The simplest way is:
```
NOPBBAM=1 ./configure.py
make -j all
```
That will skip pbbam, and it will download HDF5 headers.
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