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#ifndef _BLASR_COMPARE_SEQUENCES_PRINTER_HPP_
#define _BLASR_COMPARE_SEQUENCES_PRINTER_HPP_
#include <fstream>
#include <iostream>
#include "../algorithms/alignment/AlignmentUtils.hpp"
namespace CompareSequencesOutput{
void PrintHeader(std::ostream &out);
template<typename T_Alignment, typename T_QuerySequence, typename T_TargetSequence>
void Print(T_Alignment &alignment,
T_QuerySequence &qseq, T_TargetSequence &tseq,
std::ostream &out, bool refForward=true);
}
#include "CompareSequencesPrinterImpl.hpp"
#endif
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