File: FASTQReader.hpp

package info (click to toggle)
pbseqlib 0~20161219-1
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 5,924 kB
  • ctags: 5,123
  • sloc: cpp: 82,727; makefile: 305; python: 239; sh: 8
file content (24 lines) | stat: -rw-r--r-- 486 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
#ifndef _BLASR_FASTQ_READER_HPP_
#define _BLASR_FASTQ_READER_HPP_

#include "FASTASequence.hpp"
#include "FASTAReader.hpp"
#include "FASTQSequence.hpp"
#include "qvs/QualityValue.hpp"

class FASTQReader : public FASTAReader {
public:

    FASTQReader();

    int GetNext(FASTASequence &seq); // return 1 if suceed.

    unsigned char phredQVtoPacbioQV(unsigned char phredQV);

    int GetNext(FASTQSequence &seq); 

    int Advance(int nSteps); 
};


#endif // _BLASR_FASTQ_READER_HPP_