File: GFFFile.hpp

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#ifndef _BLASR_GFF_FILE_HPP_
#define _BLASR_GFF_FILE_HPP_

#include <iostream>
#include <fstream>
#include <sstream>
#include <string>
#include <vector>

#include "utils.hpp"
#include "Types.h"

class GFFEntry {
public:
    std::string name, type, source;
    UInt start, end;
    char strand;
    float score;
    std::string frame;
    std::string attributes;
    GFFEntry(std::string & _name, std::string & _source,
             std::string & _type, UInt & _start, UInt & _end,
             float & _score, char & _strand,
             std::string & _frame, std::string _attributes);
};

class GFFFile {
public:
    std::vector<GFFEntry> entries;
    void ReadAll(std::string & gffFileName);
};

#endif