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all:
THISDIR:=$(dir $(realpath $(lastword $(MAKEFILE_LIST))))
-include ${CURDIR}/defines.mk
include ${THISDIR}/../rules.mk
CXXOPTS += -std=c++11 -pedantic -Wall -Wextra
# CURDIR should have libconfig.h
#INCLUDES += ${CURDIR}
SYSINCLUDES = ${PBBAM_INC} ${HTSLIB_INC} ${BOOST_INC}
LIBS += ${PBBAM_LIB} ${HTSLIB_LIB}
LDFLAGS += $(patsubst %,-L%,${LIBS})
all: static shared
static: libpbdata.a
shared: libpbdata${SH_LIB_EXT}
paths := . matrix reads metagenome qvs saf utils loadpulses alignment amos sam
paths := ${paths} $(patsubst %,${THISDIR}%,${paths})
sources := $(shell find ${THISDIR} -name '*.cpp')
sources := $(notdir ${sources})
objects := $(sources:.cpp=.o)
shared_objects := $(sources:.cpp=.shared.o)
dependencies := $(objects:.o=.d) $(shared_objects:.o=.d)
vpath %.cpp ${paths}
libpbdata.a: $(objects)
$(AR) $(ARFLAGS) $@ $^
libpbdata${SH_LIB_EXT}: $(shared_objects)
libconfig.h:
echo "Please run 'configure.py' with appropriate args to generate pbdata/libconfig.h"
clean:
rm -f libpbdata.a libpbdata.so *.o *.d
-include $(dependencies)
depend: $(dependencies:.d=.depend)
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