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// Author: Mark Chaisson
#include <vector>
#include <algorithm>
#include "PulseBaseCommon.hpp"
float PulseBaseCommon::GetFrameRate() {
return scanData.frameRate;
}
unsigned int PulseBaseCommon::GetNumFrames() {
return scanData.numFrames;
}
std::string PulseBaseCommon::GetMovieName() {
return scanData.movieName;
}
std::map<char, size_t> PulseBaseCommon::GetBaseMap() {
return scanData.baseMap;
}
bool PulseBaseCommon::LookupReadIndexByHoleNumber(uint32_t holeNumber, int &readIndex) {
std::vector<uint32_t>::iterator holeIt;
if (holeNumbers.size() == 0) {
return false;
}
holeIt = lower_bound(holeNumbers.begin(), holeNumbers.end(), holeNumber);
if (holeIt == holeNumbers.end()) {
return false;
}
if (*holeIt == holeNumber) {
readIndex = holeIt - holeNumbers.begin();
return true;
}
else {
return false;
}
}
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