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#ifndef _BLASR_READ_TYPE_HPP
#define _BLASR_READ_TYPE_HPP
#include <string>
class ReadType {
public:
enum ReadTypeEnum {NoReadType=0, Standard=1, CCS=2, RCCS=3, POLYMERASE=4, HQREGION=5, SUBREAD=6, SCRAP=7, UNKNOWN=8};
static ReadTypeEnum ParseReadType(std::string &readTypeString);
static std::string ToString(const ReadType::ReadTypeEnum & readType);
};
//The READTYPE values encountered in secondary analysis will be limited to SUBREAD and CCS.
//POLYMERASE, HQREGION, SCRAP, and UNKNOWN will only be encountered in intermediate steps before
//secondary analysis.
//NoReadType, Standard and RCCS were used in CMP.H5 deprecated.
#endif
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