File: RegionTypeMap.cpp

package info (click to toggle)
pbseqlib 0~20161219-1
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 5,924 kB
  • ctags: 5,123
  • sloc: cpp: 82,727; makefile: 305; python: 239; sh: 8
file content (54 lines) | stat: -rw-r--r-- 1,809 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
// Author: Yuan Li

#include "RegionTypeMap.hpp"

std::string RegionTypeMap::ToString(RegionType rt) {
    assert(RegionTypeToString.find(rt) != RegionTypeToString.end());
    return RegionTypeToString.find(rt)->second;
}

RegionType RegionTypeMap::ToRegionType(const std::string & str) {
    if (StringToRegionType.find(str) == StringToRegionType.end()) {
        std::cout << "Unsupported RegionType " << str << std::endl;
        assert(false);
    }
    return StringToRegionType.find(str)->second;
}

int RegionTypeMap::ToIndex(const std::string & typeStr, const std::vector<std::string> & typeStrs) {
    auto it = std::find(typeStrs.begin(), typeStrs.end(), typeStr);
    if (it == typeStrs.end()) {
        std::cout << "Could not find RegionType " << typeStr << std::endl;
        assert(false);
    } else {
        return std::distance(typeStrs.begin(), it);
    }
}

int RegionTypeMap::ToIndex(RegionType rt, const std::vector<std::string> & typeStrs) {
    return RegionTypeMap::ToIndex(RegionTypeMap::ToString(rt), typeStrs);
}

int RegionTypeMap::ToIndex(RegionType rt, const std::vector<RegionType> & regionTypes) {
    auto it = std::find(regionTypes.begin(), regionTypes.end(), rt);
    if (it == regionTypes.end()) {
        std::cout << "Could not find RegionType " << RegionTypeMap::ToString(rt) << std::endl;
        assert(false);
    } else {
        return std::distance(regionTypes.begin(), it);
    }
}

const std::map<RegionType, std::string> RegionTypeMap::RegionTypeToString = {
    {Adapter,  "Adapter"},
    {Insert,   "Insert"},
    {HQRegion, "HQRegion"},
    {BarCode,  "Barcode"}
};

const std::map<std::string, RegionType> RegionTypeMap::StringToRegionType = {
    {"Adapter",  Adapter},
    {"Insert",   Insert},
    {"HQRegion", HQRegion},
    {"Barcode",  BarCode},
};