1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
|
#include "SAMHeader.hpp"
#include <algorithm>
void SAMHeader::StoreValues(std::vector<SAMKeywordValuePair> &kvPairs,
int lineNumber) {
for (size_t i = 0; i < kvPairs.size(); i++) {
if (kvPairs[i].key == "VN") {
formatVersion = kvPairs[i].value;
}
else if (kvPairs[i].key == "SO") {
string value = kvPairs[i].value;
std::transform(value.begin(), value.end(), value.begin(), ::tolower);
if (value == "unknown" || value == "unsorted") {
sortingOrder = unknown;
}
else if (value == "sorted") {
sortingOrder = sorted;
}
else if (value == "queryname") {
sortingOrder =queryname;
}
else if (value == "coordinate") {
sortingOrder = coordinate;
}
else {
std::cout << "Invalid sorting order " << kvPairs[i].value << " at line " << lineNumber;
}
}
}
}
|
