File: SAMHeader.hpp

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pbseqlib 0~20161219-1
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#ifndef _BLASR_SAM_HEADER_HPP_
#define _BLASR_SAM_HEADER_HPP_

#include <string>

#include "SAMKeywordValuePair.hpp"

class SAMHeader {
 public:
  string formatVersion;
  enum SortingOrder {unknown, sorted , queryname, coordinate};
  SortingOrder sortingOrder;

  void StoreValues(std::vector<SAMKeywordValuePair> &kvPairs, int lineNumber = 0);
};


#endif