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/*
* ============================================================================
*
* Filename: HDFBasReader_gtest.cpp
*
* Description: Test hdf/HDFBasReader.hpp
*
* Version: 1.0
* Created: 08/23/2013 10:17:14 AM
* Revision: 08/20/2014
* Compiler: gcc
*
* Author: Yuan Li (yli), yli@pacificbiosciences.com
* Company: Pacific Biosciences
*
* ============================================================================
*/
#include "gtest/gtest.h"
#include "HDFBasReader.hpp"
#include "pbdata/testdata.h"
using namespace std;
using namespace H5;
class HDFBasReaderTEST : public ::testing::Test {
public:
virtual void SetUp() {
fileName = baxFile3;
reader.InitializeDefaultIncludedFields();
ASSERT_EQ(reader.Initialize(fileName), 1);
}
virtual void TearDown() {
reader.Close();
}
string fileName;
T_HDFBasReader<SMRTSequence> reader;
};
TEST_F(HDFBasReaderTEST, ReadBaseFromBaseCalls) {
ASSERT_EQ(reader.GetMovieName(),
"m150223_190837_42175_c100735112550000001823160806051530_s1_p0");
SMRTSequence seq;
for(int i=0; i < 1000; i++) {
reader.GetNext(seq);
}
}
TEST_F(HDFBasReaderTEST, GetChemistryTriple) {
string bindingKit, sequencingKit, version;
reader.GetChemistryTriple(bindingKit, sequencingKit, version);
EXPECT_EQ(bindingKit, "100356300");
EXPECT_EQ(sequencingKit, "100356200");
EXPECT_EQ(version, "2.3");
}
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