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#ifndef _BLASR_LISPVALUE_HPP_
#define _BLASR_LISPVALUE_HPP_
#include <cmath>
#include <alignment/algorithms/anchoring/ScoreAnchors.hpp>
#include <alignment/datastructures/anchoring/MatchPos.hpp>
#include <alignment/tuples/TupleCountTable.hpp>
template <typename T_MatchPos>
void StoreNonOverlappingIndices(std::vector<T_MatchPos> &lis, std::vector<T_MatchPos> &noOvpLis);
template <typename T_TextSequence, typename T_Sequence, typename T_MatchPos, typename T_Tuple>
float ComputeLISPValue(std::vector<T_MatchPos> &lis, T_TextSequence &text, T_Sequence &read,
TupleMetrics &tm, TupleCountTable<T_TextSequence, T_Tuple> &ct,
int &lisNBases, int &lisSize);
#include "LISPValueImpl.hpp"
#endif
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