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#ifndef _SIMULATOR_CONTEXT_SAMPLE_HPP_
#define _SIMULATOR_CONTEXT_SAMPLE_HPP_
#include <iostream>
#include <string>
#include <vector>
#include <alignment/simulator/QualitySample.hpp>
#include <alignment/statistics/StatUtils.hpp>
class ContextSample
{
public:
std::vector<QualitySample> samples;
size_t minSamples;
size_t maxSamples;
int reachedMinSamples;
ContextSample();
size_t GetNSamples();
int AppendSample(SMRTSequence &seq, DNALength pos);
QualitySample *GetRandomQualitySample();
void Write(std::ofstream &out);
void Read(std::ifstream &in);
};
#endif
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