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#ifndef _SIMULATOR_QUALITY_SAMPLE_HPP_
#define _SIMULATOR_QUALITY_SAMPLE_HPP_
#include <iostream>
#include <pbdata/Types.h>
#include <pbdata/SMRTSequence.hpp>
#include <pbdata/qvs/QualityValue.hpp>
#define NQV 4
#define NFV 3
#define NT 2
class QualitySample
{
public:
QualityValue qv[NQV];
HalfWord frameValues[NFV];
Nucleotide tags[NT];
void CopyFromSequence(SMRTSequence &seq, int pos);
void Write(std::ofstream &out);
void Read(std::ifstream &in);
void CreateFromRead(SMRTSequence &seq, DNALength pos);
};
#endif
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