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#ifndef _BLASR_TUPLE_COUNT_TABLE_HPP_
#define _BLASR_TUPLE_COUNT_TABLE_HPP_
#include <algorithm>
#include <cassert>
#include <fstream>
#include <iostream>
#include <alignment/tuples/TupleMetrics.hpp>
template <typename TSequence, typename TTuple>
class TupleCountTable
{
public:
int *countTable;
TupleData countTableLength;
int nTuples;
TupleMetrics tm;
bool deleteStructures;
void InitCountTable(TupleMetrics &ptm);
TupleCountTable();
~TupleCountTable();
void Free();
void IncrementCount(TTuple &tuple);
void AddSequenceTupleCountsLR(TSequence &seq);
void Write(std::ofstream &out);
void Read(std::ifstream &in);
};
#include "TupleCountTableImpl.hpp"
#endif
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