1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
|
#ifndef _BLASR_FASTQ_READER_HPP_
#define _BLASR_FASTQ_READER_HPP_
#include <pbdata/FASTAReader.hpp>
#include <pbdata/FASTASequence.hpp>
#include <pbdata/FASTQSequence.hpp>
#include <pbdata/qvs/QualityValue.hpp>
class FASTQReader : public FASTAReader
{
public:
FASTQReader();
int GetNext(FASTASequence &seq); // return 1 if suceed.
unsigned char phredQVtoPacbioQV(unsigned char phredQV);
int GetNext(FASTQSequence &seq);
int Advance(int nSteps);
};
#endif // _BLASR_FASTQ_READER_HPP_
|
