File: SAMHeader.hpp

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pbseqlib 5.3.1%2Bdfsg-2.1
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#ifndef _BLASR_SAM_HEADER_HPP_
#define _BLASR_SAM_HEADER_HPP_

#include <string>

#include <pbdata/sam/SAMKeywordValuePair.hpp>

class SAMHeader
{
public:
    std::string formatVersion;
    enum SortingOrder
    {
        unknown,
        sorted,
        queryname,
        coordinate
    };
    SortingOrder sortingOrder;

    void StoreValues(std::vector<SAMKeywordValuePair> &kvPairs, int lineNumber = 0);
};

#endif