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#include <hdf/HDFAlnGroupGroup.hpp>
bool HDFAlnGroupGroup::Create(HDFGroup &parent)
{
parent.AddGroup("AlnGroup");
if (alnGroup.Initialize(parent.group, "AlnGroup") == 0) {
return 0;
}
idArray.Create(alnGroup, "ID");
pathArray.Create(alnGroup, "Path");
return true;
}
int HDFAlnGroupGroup::AddPath(std::string path)
{
pathArray.Write(&path, 1);
unsigned int id = pathArray.size();
idArray.Write(&id, 1);
int size = pathArray.size();
return size;
}
int HDFAlnGroupGroup::Initialize(HDFGroup &parent)
{
if (alnGroup.Initialize(parent.group, "AlnGroup") == 0) {
std::cout << "ERROR, could not open /AlnGroup group." << std::endl;
std::exit(EXIT_FAILURE);
}
if (idArray.Initialize(alnGroup, "ID") == 0) {
std::cout << "ERROR, could not open /AlnGroup/ID." << std::endl;
std::exit(EXIT_FAILURE);
}
if (pathArray.Initialize(alnGroup, "Path") == 0) {
std::cout << "ERROR, could not open /AlnGroup/Path." << std::endl;
std::exit(EXIT_FAILURE);
}
return 1;
}
void HDFAlnGroupGroup::Read(AlnGroup &aln)
{
UInt nRow = idArray.size();
if (nRow > 0) {
aln.id.resize(nRow);
idArray.Read(0, nRow, &aln.id[0]);
aln.path.resize(nRow);
unsigned int i;
for (i = 0; i < nRow; i++) {
pathArray.Read(i, i + 1, &aln.path[i]);
}
}
}
HDFAlnGroupGroup::~HDFAlnGroupGroup() { alnGroup.Close(); }
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