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/*
* ==================================================================
*
* Filename: RegionTypeMap_gtest.cpp
*
* Description: Test pbdata/reads/RegionAnnotations.hpp
*
* Version: 1.0
* Created: 09/27/2015 03:54:55 PM
* Compiler: gcc
*
* Author: Yuan Li (yli), yli@pacificbiosciences.com
* Company: Pacific Biosciences
*
* ==================================================================
*/
#include <string>
#include <vector>
#include <gtest/gtest.h>
#define private public
#include <pbdata/reads/RegionTypeMap.hpp>
// Adater - 0, Insert - 1, HQRegion - 2
const std::vector<RegionType> TYPES = {Adapter, Insert, HQRegion};
TEST(RegionTypeMapTest, ToString)
{
EXPECT_EQ(RegionTypeMap::ToString(Adapter), "Adapter");
EXPECT_EQ(RegionTypeMap::ToString(HQRegion), "HQRegion");
EXPECT_EQ(RegionTypeMap::ToString(Insert), "Insert");
}
TEST(RegionTypeMapTest, ToRegionType)
{
EXPECT_EQ(RegionTypeMap::ToRegionType("Adapter"), Adapter);
EXPECT_EQ(RegionTypeMap::ToRegionType("HQRegion"), HQRegion);
EXPECT_EQ(RegionTypeMap::ToRegionType("Insert"), Insert);
}
TEST(RegionTypeMapTest, ToIndex)
{
// In most bas.h5 files, order of region types:
std::vector<std::string> typeStrs = {"Insert", "Adapter", "HQRegion"};
EXPECT_EQ(RegionTypeMap::ToIndex(Insert, typeStrs), 0);
EXPECT_EQ(RegionTypeMap::ToIndex(Adapter, typeStrs), 1);
EXPECT_EQ(RegionTypeMap::ToIndex(HQRegion, typeStrs), 2);
EXPECT_EQ(RegionTypeMap::ToIndex("Insert", typeStrs), 0);
EXPECT_EQ(RegionTypeMap::ToIndex("Adapter", typeStrs), 1);
EXPECT_EQ(RegionTypeMap::ToIndex("HQRegion", typeStrs), 2);
// Test given a different region type order.
typeStrs = {"Insert", "HQRegion", "Adapter", "BarCode"};
EXPECT_EQ(RegionTypeMap::ToIndex(Insert, typeStrs), 0);
EXPECT_EQ(RegionTypeMap::ToIndex(HQRegion, typeStrs), 1);
EXPECT_EQ(RegionTypeMap::ToIndex(Adapter, typeStrs), 2);
EXPECT_EQ(RegionTypeMap::ToIndex("Insert", typeStrs), 0);
EXPECT_EQ(RegionTypeMap::ToIndex("HQRegion", typeStrs), 1);
EXPECT_EQ(RegionTypeMap::ToIndex("Adapter", typeStrs), 2);
}
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