File: FASTQReader.hpp

package info (click to toggle)
pbseqlib 5.3.4%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 7,020 kB
  • sloc: cpp: 77,246; python: 331; sh: 103; makefile: 42
file content (23 lines) | stat: -rw-r--r-- 512 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
#ifndef _BLASR_FASTQ_READER_HPP_
#define _BLASR_FASTQ_READER_HPP_

#include <pbdata/FASTAReader.hpp>
#include <pbdata/FASTASequence.hpp>
#include <pbdata/FASTQSequence.hpp>
#include <pbdata/qvs/QualityValue.hpp>

class FASTQReader : public FASTAReader
{
public:
    FASTQReader();

    int GetNext(FASTASequence &seq);  // return 1 if suceed.

    unsigned char phredQVtoPacbioQV(unsigned char phredQV);

    int GetNext(FASTQSequence &seq);

    int Advance(int nSteps);
};

#endif  // _BLASR_FASTQ_READER_HPP_