File: GFFFile.hpp

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pbseqlib 5.3.4%2Bdfsg-3
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#ifndef _BLASR_GFF_FILE_HPP_
#define _BLASR_GFF_FILE_HPP_

#include <fstream>
#include <iostream>
#include <sstream>
#include <string>
#include <vector>

#include <pbdata/Types.h>
#include <pbdata/utils.hpp>

class GFFEntry
{
public:
    std::string name, type, source;
    UInt start, end;
    char strand;
    float score;
    std::string frame;
    std::string attributes;
    GFFEntry(std::string& _name, std::string& _source, std::string& _type, UInt& _start, UInt& _end,
             float& _score, char& _strand, std::string& _frame, std::string _attributes);
};

class GFFFile
{
public:
    std::vector<GFFEntry> entries;
    void ReadAll(std::string& gffFileName);
};

#endif