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#ifndef _BLASR_TUPLE_LIST_HPP_
#define _BLASR_TUPLE_LIST_HPP_
#include <algorithm>
#include <cstdint>
#include <fstream>
#include <iostream>
#include <string>
#include <vector>
#include <pbdata/Types.h>
#include <alignment/tuples/TupleMetrics.hpp>
template <typename T>
class TupleList
{
int listLength;
TupleMetrics tm;
public:
typedef T Tuple;
std::vector<T> tupleList;
TupleList();
void Reset();
T &operator[](int index);
void GetTupleMetrics(TupleMetrics &ptm);
void SetTupleMetrics(TupleMetrics &ptm);
int size();
int GetLength();
int InitFromFile(std::string &fileName);
void clear();
int WriteToFile(std::string &fileName);
//
// Find one instance of a match.
//
int Find(T &tuple);
//
// Find the boundaries of all instances of a match.
//
void FindAll(T &tuple, typename std::vector<T>::const_iterator &firstPos,
typename std::vector<T>::const_iterator &endPos);
void Append(T &tuple);
void Insert(T &tuple);
void Sort();
void Print();
};
#include "TupleListImpl.hpp"
#endif // _BLASR_TUPLE_LIST_HPP_
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