File: SeqUtils.hpp

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#ifndef _BLASR_SEQ_UTILS_HPP_
#define _BLASR_SEQ_UTILS_HPP_

#include <pbdata/DNASequence.hpp>

template <typename T_Sequence>
int OnlyACTG(T_Sequence &seq);

template <typename T_Sequence>
DNALength CountMasked(T_Sequence &seq);

template <typename T_Sequence>
int CountNotMasked(T_Sequence &seq);

#include "SeqUtilsImpl.hpp"

#endif  // _BLASR_SEQ_UTILS_HPP_