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#include <alignment/algorithms/anchoring/FindMaxInterval.hpp>
unsigned int NumRemainingBases(DNALength curPos, DNALength intervalLength)
{
if (curPos > intervalLength) {
return 0;
} else {
return intervalLength - curPos;
}
}
IntervalSearchParameters::IntervalSearchParameters()
{
advanceHalf = false;
globalChainType = 0;
maxPValue = log(0.1);
aboveCategoryPValue = 0;
warp = true;
fastMaxInterval = false;
aggressiveIntervalCut = false;
verbosity = 0;
ddPValueThreshold = -500;
}
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