File: ClusterList.hpp

package info (click to toggle)
pbseqlib 5.3.5%2Bdfsg-11
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 7,152 kB
  • sloc: cpp: 77,259; python: 331; sh: 103; makefile: 41
file content (27 lines) | stat: -rw-r--r-- 569 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
#ifndef _BLASR_CLUSTER_LIST_HPP_
#define _BLASR_CLUSTER_LIST_HPP_

#include <vector>

#include <pbdata/DNASequence.hpp>

class ClusterList
{
public:
    std::vector<int> numBases;
    std::vector<int> numAnchors;
    std::vector<unsigned int> startPos;
    std::vector<int> indices;
    int lowerSizeLimit;
    int lowerSizeLimitNumAnchors;
    DNALength curp, cure;  // cur - p, and cur - e.
    int curIndex;
    bool onContigStart;

    ClusterList();
    void Clear();
    bool Store(int n, DNALength p, DNALength e, int b);
    void ResetCoordinates();
};

#endif