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// Author: Mark Chaisson
#include <pbdata/reads/PulseBaseCommon.hpp>
#include <algorithm>
#include <vector>
float PulseBaseCommon::GetFrameRate() { return scanData.frameRate; }
unsigned int PulseBaseCommon::GetNumFrames() { return scanData.numFrames; }
std::string PulseBaseCommon::GetMovieName() { return scanData.movieName; }
std::map<char, size_t> PulseBaseCommon::GetBaseMap() { return scanData.baseMap; }
bool PulseBaseCommon::LookupReadIndexByHoleNumber(uint32_t holeNumber, int &readIndex)
{
std::vector<uint32_t>::iterator holeIt;
if (holeNumbers.size() == 0) {
return false;
}
holeIt = lower_bound(holeNumbers.begin(), holeNumbers.end(), holeNumber);
if (holeIt == holeNumbers.end()) {
return false;
}
if (*holeIt == holeNumber) {
readIndex = holeIt - holeNumbers.begin();
return true;
} else {
return false;
}
}
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